Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08522 ATGAAGGATGGTGGTAGAAAACAAGGTGTAATGACACCATGTGCTGCATGCAAGCTTCTTAGAAGAAGATGTGCTCATGATTGTGTATTTGCTCCATATTTTCCAGCTGATGAACCTCACAAGTTCGGAAGTGTTCACAAGGTTTTTGGGGCAAGCAATGTGAACAAAATGTTACAGGAATTACCGGAACATCAACGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGTACTTCAAACCCAATTAGCACAAGCACAAGCAGAGGTTGTTCATATGAAAATTCATCAATCTTCATCATCATCATCAGATCAACACCAAGCATCACCATCATCAGAAAATGTGTACCATTTGGGGTCATACTAG 435 0.4069 MKDGGRKQGVMTPCAACKLLRRRCAHDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLAQAQAEVVHMKIHQSSSSSSDQHQASPSSENVYHLGSY 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08522 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 133 - -
Vifa1g08522 144 Coils Coil 92 112 - -
Vifa1g08522 144 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vifa1g08522 144 MobiDBLite consensus disorder prediction 118 144 - -
Vifa1g08522 144 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08522 Vifa-Chr1 1344357973 1344360277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08522 1 123 AS2 family AT1G31320 81.301 2.19e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g08522 LOB 4.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08522 - - cam:101492597 218.394