Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08520 ATGGCTTCCTCATCTCACAAACTATTCCTCCTTCTCTTCACAATCCTCATCTCACTCACTTTACCTCTCCAAACAACCACTTCCACAACCACAACGTTAAATCTCAAACTCACTTCCTTAAAATCTCTCTGCAAAACAACACCATACCCAAAACTTTGTTTTAATTCCTTAAAACTCTCCATATCAATAAACATAAACCCAAACATCATAACCTTCCTCCTTGAATCCCTTCAACAAGCAATATCCGAAACCACAAAGCTCTCTAATCTTTTCCGCAACATCGAGCACTCGAACATCATCGAGAAACAAAGAGGATCAATTCAAGACTGCAGGGAGCTTCACCAATCAACCTTAACTTCATTAAAAACATCATTAACCCGAATCCGTTCCTCCAACAAAAGAAACATAGCTGATGCTAGAATCTACCTCAGTGCAGCACTTACAAACAAAAACACATGTTTAGAAGGACTTGATTCTACTTCTGGCAACCTTAAACCACTTCTCATGAACTCTGTCATCAACACATACAAACATGTGAGTAACACTCTTTCCATGCTCTCAAATCATATAAATTCGCCTTCAAATCAAAAGGGTTACAATAAAAAAATGGTTTCTCCAAAACGGCTAGATTTGAATGAATATGAATACGATCCAAATGAAGCTATTGTTGTGGCTGCAGATGGAAGTGGGAACTTTAGCACTGTCAATGATGCTATAAACTTTGCACCAAATAATAGTATGGTTAGGATAGTGATTTATGTCAAAGAAGGGACTTATGATGAAAACGTTGAAATACCAAGTTATAAAACTAACATTATCATGCTTGGTGATGGAAGTGATTCTACTGTCATCACTGGTAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACTTTAGCTGTATCTGGCGATGGTTTTCTTGCGAGAGACATATCATTTGAGAACAAAGCAGGAGCAGAGAAACATCAAGCAGTTGCATTAAGAGTAAATGCAGACTTTACAGCCTTCTACAAATGCGCAATTTATGGTTACCAAGACACACTTTATGTGCATTCATTTCGACAATTCTATCGAGAATGTGACATCTACGGTACCATCGATTTCATATTCGGTAACGCAGCGGTCGTATTACAAGAATGCAACATTATTTCAAGAATGCCATTGCCAAATCAATTCACTGTCATAACAGCACAGTCAAGAGATAATCCGGACGAAGACACTGGAATTTCGATACAGAACTGTTCGATTCTAGCTACGGATGAACTCTATTCGAACCTTGGTAAAATCAAGAGTTACCTTGGAAGGCCATGGAGGGTTTATTCTAGAACTGTTTTGATTGAAAGTTATATTGATGATTTTATTGATGAAAAGGGTTGGACAAAATGGTCTAATGATCAAGGTTTGGATAGTTTGTTTTATGGTGAGTATGAGAATTATGGACCGGGTTCCAAGATTGATAATCGGGTTGAATGGTTGGGTTACCATTTAATGGATTATAATGATGCTTATAACTTTACAGTTTCTGAGTTTATTACTGGGGATGAATGGCTTGAGTCTACTTCAGTTCCTTATGATGATGGAATTTGA 1596 0.3759 MASSSHKLFLLLFTILISLTLPLQTTTSTTTTLNLKLTSLKSLCKTTPYPKLCFNSLKLSISININPNIITFLLESLQQAISETTKLSNLFRNIEHSNIIEKQRGSIQDCRELHQSTLTSLKTSLTRIRSSNKRNIADARIYLSAALTNKNTCLEGLDSTSGNLKPLLMNSVINTYKHVSNTLSMLSNHINSPSNQKGYNKKMVSPKRLDLNEYEYDPNEAIVVAADGSGNFSTVNDAINFAPNNSMVRIVIYVKEGTYDENVEIPSYKTNIIMLGDGSDSTVITGNRSVVDGWTTFRSATLAVSGDGFLARDISFENKAGAEKHQAVALRVNADFTAFYKCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECNIISRMPLPNQFTVITAQSRDNPDEDTGISIQNCSILATDELYSNLGKIKSYLGRPWRVYSRTVLIESYIDDFIDEKGWTKWSNDQGLDSLFYGEYENYGPGSKIDNRVEWLGYHLMDYNDAYNFTVSEFITGDEWLESTSVPYDDGI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08520 531 Pfam Pectinesterase 222 517 IPR000070 GO:0030599|GO:0042545
Vifa1g08520 531 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Vifa1g08520 531 SMART PMEI_2 35 185 IPR006501 GO:0004857
Vifa1g08520 531 FunFam Pectinesterase 36 188 - -
Vifa1g08520 531 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Vifa1g08520 531 FunFam Pectinesterase 215 531 - -
Vifa1g08520 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 189 IPR035513 -
Vifa1g08520 531 PANTHER PECTINESTERASE 20 521 - -
Vifa1g08520 531 Gene3D - 217 531 IPR012334 -
Vifa1g08520 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Vifa1g08520 531 CDD PMEI-like_3 42 188 - -
Vifa1g08520 531 NCBIfam pectinesterase inhibitor domain 12 188 IPR006501 GO:0004857
Vifa1g08520 531 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Vifa1g08520 531 SUPERFAMILY Pectin lyase-like 219 528 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08520 Vifa-Chr1 1344203420 1344205400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08520 32 531 Carbohydrate Esterase AT2G26440 62.428 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08520 - - psat:127136348 901.353