Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08514 ATGCCCTTATCTCAATCTCCCATGGCTTCTTCAATCCCTCACCACTTCTATCCAAACTACACTCCTGATTTCACAGCAAACCAAGGTTTGATGTCTTCATCTATCCTGGACAATAATACTATGATGTGGGGTTGTCAAGAAAATATCATGCCGGTTTTTGATAATTATGGGACATATGATCAAATTGTGTCACTTGATTCTGATGCTATGTCTTCTGGTACTTGGGTTCCAAATTTCGTCGAGCAACAAGATTTCGCTGTTCCGGCTTTGTTATCGGATTGTAAAGTCGGATTCTATGGTGGAGGGTTTCAGAATTTTAATGGAAGATATAGTAACAATAATCAGCCACATGTTGGTCACGAGTTTGTAGAAGATCAATGTTGCGGTTTTGTTGAAGATATTAAACCACTTCCTACAACTTTTCCTAATGTTTCAAGAGATAATTGGGGGATTCAAGGTAATCAAATAGCAGCAGTTGAAGAACCAAATATAAAAGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTTCGATATTTGAAGAAAAGAAATCAAAGAAACTTCAACAAAACCATCAAGTATGCATGTCGGAAAACTTTAGCTGATAGAAGAGTGAGAGTGAGAGGAAGGTTTGCAAGAAACAATGAAATATGTGAAGAAGAACACATGGCCACAAAAAAGCTTGAGAATCATCATGATCATATTAATGAAGACTTTTATGGTTCTGATTCATTCCAGTTCCAGTTAAAGAATGAAGAGGAGGATTGGCTTCAAGAAGCCATGGCAAGTTTGGTGTATTTATCTCATTCATCACCAGAAGATATATGA 834 0.3693 MPLSQSPMASSIPHHFYPNYTPDFTANQGLMSSSILDNNTMMWGCQENIMPVFDNYGTYDQIVSLDSDAMSSGTWVPNFVEQQDFAVPALLSDCKVGFYGGGFQNFNGRYSNNNQPHVGHEFVEDQCCGFVEDIKPLPTTFPNVSRDNWGIQGNQIAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEICEEEHMATKKLENHHDHINEDFYGSDSFQFQLKNEEEDWLQEAMASLVYLSHSSPEDI 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08514 277 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 105 227 IPR045281 GO:0009909
Vifa1g08514 277 Pfam CCT motif 174 216 IPR010402 GO:0005515
Vifa1g08514 277 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08514 Vifa-Chr1 1343020833 1343022637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08514 170 226 C2C2-CO-like Transcription Factor Family AT5G15850 45.614 7.14e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g08514 CCT 8.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08514 - - cam:101492034 410.609