Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08510 ATGGCACTTTCTTCAACAAAACCAAACCCTACTCTCATCACATTCACATTCACATTCCTTTTCTTAACTTTCTCGTTGTGCAGTACTCCATTGCTGTGTGCTAGTGTTCCAACAGAAACAGTAGCTGGATTTGAGTTTCTTAAGGTTGCTCCATCTGAGTTTGTTGGGTCAGTGAATGACGTTGTTGATATTTTGCAACAGGTTACAAGTATTCTTTCGCAATTTGGTGGTGATGACTTTGGTGATTCACGGCTCTCTAATGCTGTTTCTGATTGCATTGATTTGCTTGACCTTTCCTCTGATGCACTTACTTGGTCTGTTTCTGCTACTCAGACCCCCCAAGGTAAGCATAATAGTACAGGAAATGTGAGTTCTGATGTAAGAACATGGCTTAGTGCTGCACTTGCAAATCCAGAGACATGCGAAAACGGATTTGAAGGTACAAATGGCATTGTAAGCACTTTAGTCTCCACTGGCCTAGGCCAAATGATGTCACTACTCACAGAGCTTCTCACACAAGTGGACCCTAACTTCGATAGCTTCACAACAAAGCAAGCACAAAAAGGTCAGTTTCCTGCATGGTTTAAACGTGAAGATAGAAAGCTGTTGATGGCAAATGGGGTTGGCGTGGACGTTGTGGTAGCTAAGGATGGTAGTGGTAATTTTACGACGGTGATGGACGCGGTGCATGCAGCTCCTGATTATAGCATTAAACGGTTTGTGATTTATGTGAAGAGAGGTGTTTATGTTGAAAATGTTGAAATAAAGAAGAAGAAGTGGAATCTTATGATGGTTGGAGATGGTATGAATGCGAGTGTCATATCGGGTAATCGGAGCTTCATCGACGGGTGGACCACATTCAGATCAGCTACCTTTGCTGTGAGTGGCAGAGGATTTATAGCAAGAGACATAAGTTTTCAAAACACTGCAGGTCCTGAGAAGCACCAAGCAGTGGCATTAAGATCGGACTCCGACCTTTCTGTATTTTACCGATGCGGAATTTTTGGTTACCAAGACAGTCTCTATACTCACACAATGCGTCAATTCTATCGCGAATGCAAAATAAGCGGCACCGTAGATTTTATCTTCGGCGACGCCACAACAGTTTTTCAAAACTGTCAAATACTAGTCAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCACAAGGACGAAAAGATCCCAACGAACCAACCGGTTTCTCAATCCAATTCTGCAACATCACTGCTGATACCGACCTTGTTCCTTTAGTTAACTCCACATGGACATATCTTGGAAGACCATGGAAACAATACTCGAGAACAGTTTTCATGCAATCTCACATAAGTGATGTGTTACGGCCGGAAGGGTGGCTAGAGTGGAACGGAGATTTTGCGTTGGATACATTATACTATGCAGAGTACATGAATTATGGTCTTGGAGCTGGATTGAACAAACGAGTTAAATGGCCAGGGTATCATATTATAAATGATTCTAGTCATGCTAATAACTTCACAGTCACACAATTTCTTGAGGGGAATCTGTGGTTGCCTACCACTGGTGTATCATTTACTGCTGGACTAGGAGATGTTTAA 1578 0.4233 MALSSTKPNPTLITFTFTFLFLTFSLCSTPLLCASVPTETVAGFEFLKVAPSEFVGSVNDVVDILQQVTSILSQFGGDDFGDSRLSNAVSDCIDLLDLSSDALTWSVSATQTPQGKHNSTGNVSSDVRTWLSAALANPETCENGFEGTNGIVSTLVSTGLGQMMSLLTELLTQVDPNFDSFTTKQAQKGQFPAWFKREDRKLLMANGVGVDVVVAKDGSGNFTTVMDAVHAAPDYSIKRFVIYVKRGVYVENVEIKKKKWNLMMVGDGMNASVISGNRSFIDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTVFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADTDLVPLVNSTWTYLGRPWKQYSRTVFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGLGAGLNKRVKWPGYHIINDSSHANNFTVTQFLEGNLWLPTTGVSFTAGLGDV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08510 525 Gene3D - 209 524 IPR012334 -
Vifa1g08510 525 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Vifa1g08510 525 SUPERFAMILY Pectin lyase-like 208 521 IPR011050 -
Vifa1g08510 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 174 IPR035513 -
Vifa1g08510 525 PANTHER PECTINESTERASE 59 513 - -
Vifa1g08510 525 NCBIfam pectinesterase inhibitor domain 65 153 IPR006501 GO:0004857
Vifa1g08510 525 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Vifa1g08510 525 Pfam Plant invertase/pectin methylesterase inhibitor 83 154 IPR006501 GO:0004857
Vifa1g08510 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 157 IPR035513 -
Vifa1g08510 525 SMART PMEI_2 36 173 IPR006501 GO:0004857
Vifa1g08510 525 FunFam Pectinesterase 205 522 - -
Vifa1g08510 525 Pfam Pectinesterase 211 508 IPR000070 GO:0030599|GO:0042545
Vifa1g08510 525 CDD PMEI-like_4 30 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08510 Vifa-Chr1 1342015181 1342018892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08510 19 522 Carbohydrate Esterase AT3G43270 63.566 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08510 K01051 - gmx:100777500 779.63