Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08501 ATGCTCGACAACAATGGTTCTCTCTATGGTGATCTCAAGTGCATTTGTGAGACCGACTTTGGTTTAATTTCTCAATATTGCTTAACAAAGCATGTCTTTAAGATCACGAAGCAGTACTTGGCTAAAGTGTTTATGAAAATCAATGTTAAGATAGGCGGTAGAAACATTGTTCTTGTTGATGCCGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACAATAATATTTGGAGCAAATGTTACTCACCCTGAGAATGAAGAAGACTCCAGCCCCTCAATAGCAGCTATAGTAGCGTCACAAGATTGGCCTGAAGTTATAAAGTATGCAGGTGTAGTTTGCACTCAACCTCAAAGACAAGAGCTTATACAAAATTTGTATAAAAACTTGGCACTATCCTATTCGCGGCATAGTTAG 417 0.3885 MLDNNGSLYGDLKCICETDFGLISQYCLTKHVFKITKQYLAKVFMKINVKIGGRNIVLVDAVSCRIPLVSDIPTIIFGANVTHPENEEDSSPSIAAIVASQDWPEVIKYAGVVCTQPQRQELIQNLYKNLALSYSRHS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08501 138 Gene3D - 65 135 IPR036397 GO:0003676
Vifa1g08501 138 Gene3D - 1 62 - -
Vifa1g08501 138 SUPERFAMILY Ribonuclease H-like 3 131 IPR012337 -
Vifa1g08501 138 ProSiteProfiles Piwi domain profile. 1 138 IPR003165 GO:0003676
Vifa1g08501 138 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 135 - -
Vifa1g08501 138 Pfam Piwi domain 3 129 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08501 Vifa-Chr1 1340050247 1340050663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08501 3 128 Eukaryotic Initiation Factors Gene Family AT5G43810 83.333 3.42e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08501 K11593 - gmx:100819073 221.861