Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08500 ATGCCTGATTTTCCCAAGATGGATCACAATATATCCGAAGAACGTTTTGACAAACGTTATAATACTCGTAGTTGTCCGAATTCAGGAAACAGTTCACCAACTCGTAACAAAAAATTGAATCAAGAAAAAAAAGATACTTACACAAATGAATATTCTGCAAAAAAAGATGCTTACACAAATGAATATTCTGCAAGTGAAGCTACTAAACCTATGGACCAAGGTTCTAAAACTGATGCGACATTCGCAAACAAAACGAAACCGCAGAAACTAAGTCCTCCAAACAAAAACATTTCTGATGCTTTTTCAAGACAAAGTCCAAAGGGATCAAGGGTGCCTTCAAATTCTGAACCTGCAACTCTATTACCAACAGGAGTTTCAAAGGGTATGTCTAATCATACAAAGAATAATAGTCAAGGCGGCGTGCCCGGAAGTGGATCTAGCTCACGAAGCGACAGTTTAGAGAGCACAAGTTCAAACATTAGGCCACATACTGGTGGTGATGTGAGATGGGATGCAGTTAACGTGGTTTTGAAAAGTGGTCCTTTAAATCTCAGCCATTTTCGGCTTCTTAAGCGTATCGGTTACGGAGACATCGGAAGTGTTTATCTTGTTGAACTTAAAGGAACTGATGCTCATTTTGCTATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAGCTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGACTTCTTGATCACCCTTTTTTGCCTACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTCTCGTTATGGAGTACTGTAGTGGTGGCGATCTTCATTCGCTTCGACAGAAACAGCCAAATAAGTGTTTCACCGAAGAAGCTGCAAGGTTCTATGCTTCTGAAGTTTTGTTAGCTCTTGAGTACCTCCACATGCTTGGCATTGTATACCGAGACTTAAAGCCAGAGAATCTATTAGTTAGAGACGAAGGTCACATCATGCTCTCAGATTTCGACTTATCGCTCCGCTGCTCCGTCAGTCCAACGCTAGTCAAGTCATCCTCCACCCACGCAGGAAACGGAAGCGGAAGCGATTCTGGAGGTATATTCAACGACGACCAAGCAGTGCAAGGCACTGCTCAGACATCATCAAGCTTCTTCCCTCGAATCTTGCCTTCGAAGAAAAATCGTAAGGCAAAATCAGACTTCGGCCTATTGGCCAACGGAAACCGCCTTCCCGAGCTAATGGCTGAACCAACCAACGTGAGATCAATGTCATTCGTAGGAACACACGAGTATCTTGCGCCCGAGATCATCAAAGGCGAAGGACACGGCAGTGCAGTAGACTGGTGGACATTTGGAATCTTCTTGTACGAACTATTGCACGGCGCAACGCCTTTTAAAGGCTCAGGATACAAAGCGACACTCTTCAATGTTGTTGGTCAGCCATTAAGGTTTCCGGATAATCCTCAAATAAGTCAAGTGGCTAAAGATCTTATCAGAGGATTGCTGATCAAAGAACCTCAGAAGAGAATTGCATATAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTTGAAGGAGTGAATTGGGCACTAGTTAGAAGTGCAATGCCACCACATATACCAGATGTTATAGACTTTTCAAAGTATGCTAGAAAGGAAACAGCACCACCACCAGTTGATAAGAAGTTGCCAGATGTTGGTGGTGATAAGAAATGCAAAAATTCAACTGATAATTCTTATATAGATTTTGAATATTTTTAG 1749 0.414 MPDFPKMDHNISEERFDKRYNTRSCPNSGNSSPTRNKKLNQEKKDTYTNEYSAKKDAYTNEYSASEATKPMDQGSKTDATFANKTKPQKLSPPNKNISDAFSRQSPKGSRVPSNSEPATLLPTGVSKGMSNHTKNNSQGGVPGSGSSSRSDSLESTSSNIRPHTGGDVRWDAVNVVLKSGPLNLSHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSTHAGNGSGSDSGGIFNDDQAVQGTAQTSSSFFPRILPSKKNRKAKSDFGLLANGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGSGYKATLFNVVGQPLRFPDNPQISQVAKDLIRGLLIKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPDVIDFSKYARKETAPPPVDKKLPDVGGDKKCKNSTDNSYIDFEYF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08500 582 MobiDBLite consensus disorder prediction 346 366 - -
Vifa1g08500 582 FunFam Serine/threonine-protein kinase AGC1-7 413 538 - -
Vifa1g08500 582 Gene3D Transferase(Phosphotransferase) domain 1 394 538 - -
Vifa1g08500 582 FunFam Serine/threonine-protein kinase AGC1-5 185 270 - -
Vifa1g08500 582 MobiDBLite consensus disorder prediction 37 51 - -
Vifa1g08500 582 FunFam serine/threonine-protein kinase D6PK-like 271 338 - -
Vifa1g08500 582 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g08500 582 MobiDBLite consensus disorder prediction 1 164 - -
Vifa1g08500 582 CDD STKc_phototropin_like 185 541 - -
Vifa1g08500 582 MobiDBLite consensus disorder prediction 52 163 - -
Vifa1g08500 582 MobiDBLite consensus disorder prediction 22 36 - -
Vifa1g08500 582 SMART serkin_6 187 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08500 582 Gene3D Transferase(Phosphotransferase) domain 1 271 342 - -
Vifa1g08500 582 SUPERFAMILY Protein kinase-like (PK-like) 174 539 IPR011009 -
Vifa1g08500 582 Gene3D Phosphorylase Kinase; domain 1 185 270 - -
Vifa1g08500 582 ProSiteProfiles Protein kinase domain profile. 187 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08500 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Vifa1g08500 582 PANTHER FLIPPASE KINASE 1-RELATED 35 545 - -
Vifa1g08500 582 Pfam Protein kinase domain 188 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08500 582 Pfam Protein kinase domain 394 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08500 Vifa-Chr1 1339916730 1339919237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08500 128 582 AGC Kinase Gene Family AT1G79250 67.262 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa1g08500 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08500 - - tpra:123893855 932.939