Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08498 ATGTGGCAAGCAGGCAAGAATAAGGGCAACGTGGCTTCTGAAGATTTAACTGGGACCGAGACCTCTTCCAATTCAGGCATAAGCATAGGTGCTTTGGTTGGCATAATCTTTGGCTCAATTGCCTGTGTAATTTCATTATCTGCAATTTTTATTCTTTTACTATTAAGAATAAGATTAAGACGTCATGATGCAGTTTCCAAACCACGCCATTGCACACGTGGTTATATTCAACCACTTCTATTATCTAAGATCGCAATACAAATTGATGGAAGAAGAGCTTTTACTTATGAGGAGTTGTCTGCTGCTACAAGAAATTTTGACAACAATGCTCAAATTGGACAAGGAGGTTATGGGAAGGTTTATCAAGGTATTCTTTCTAATGGCATTGTGGTTGCCATAAAACATGCACAACAAGGATCACTGCGAGGTGAGAAGGAATTTCTCACGGAAATAAGAATACTGATAAATATGAATCAGACTTTGTGTACTTTCTAA 495 0.3798 MWQAGKNKGNVASEDLTGTETSSNSGISIGALVGIIFGSIACVISLSAIFILLLLRIRLRRHDAVSKPRHCTRGYIQPLLLSKIAIQIDGRRAFTYEELSAATRNFDNNAQIGQGGYGKVYQGILSNGIVVAIKHAQQGSLRGEKEFLTEIRILINMNQTLCTF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08498 164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 157 - -
Vifa1g08498 164 ProSiteProfiles Protein kinase domain profile. 106 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08498 164 Gene3D Phosphorylase Kinase; domain 1 81 161 - -
Vifa1g08498 164 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g08498 164 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Vifa1g08498 164 SUPERFAMILY Protein kinase-like (PK-like) 76 157 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08498 Vifa-Chr1 1339735425 1339736709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08498 25 159 Receptor kinase-like Gene Family AT5G37450 39.259 4.94e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa1g08498 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08498 - - gmx:100786467 146.747