Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08496 ATGTCAAGTGTGGCTGTAAAACTCTACAGCGTATTCTTCAAGTTCCTCTTGAAGCACCGTTTACAAAACCGGATTCAAGCCCAACCCGACAATAACTCCAACTCGTTTGGTATCACTTCACGACCCGAAAAATCCGTCGCTAACTCTAACCCTTCTTTTATCGACGGCCCTTATTCCAAACCTAACTCCAAACCTAAACAACAAGCTCCCGAACCTGGATCTGTACGGAGAAGTAGCTATGGTCCTCCGTTCAGGGAAGAGCAGCTCCGAGGAAGGAATAGTAACGCTGTTAAGGGTTTGAATTTGATGGGCGTTGGTGTTGAAACCGGTTCCGATTTGTACCGTGGTTACTCGCCGGTGTTGGATAATCGGCGGAGGAAATTACCGGTGATGTTGCAGTTTCATGGTGGGGGTGGGTTGGCGCCGGAGAGTAGGTATCCGGCTGCGTTTGAGGATGGGTTGAAGGTGTTGAATTGGTTGGCCAAGCAGGCGAGTTTGGCCGAGTGTAGTAAATCTATGGGGGTTGGTGGAGGAAGCCATGGTGGTGGTGGTGGTGGGGAGTTTAAAAAGGATAATCATAGGCATATTGTTGATTCTTTTGGTGCTTCAGTGGTGGAGCCTTGGTTGGCTAGTCATGGAGATCCAACAAGGTGCAAGCCATACATAGCTATGATTTGTCTTCAATTTGGTTTTGCTGCTATTGCTCCATTCGCTATAGTTCTTGAGAGGAAGATAAGGCCAAGGATTACGTTTCTTATGTTCATGCAAATGTTTGTATTGGGACTCCTCGGGCCTGTGATTGATCAGAATCTATACTGTGCTGGGTTGAAATTCACATCTCCAACATACTCTTGTGCTATTAGCAATATTCTCCCTGCAATGACTTTTGTAATGGCTGTTACTTTCAGGATGGAGAAATTGGACCCAGAACCGATGTAA 939 0.4643 MSSVAVKLYSVFFKFLLKHRLQNRIQAQPDNNSNSFGITSRPEKSVANSNPSFIDGPYSKPNSKPKQQAPEPGSVRRSSYGPPFREEQLRGRNSNAVKGLNLMGVGVETGSDLYRGYSPVLDNRRRKLPVMLQFHGGGGLAPESRYPAAFEDGLKVLNWLAKQASLAECSKSMGVGGGSHGGGGGGEFKKDNHRHIVDSFGASVVEPWLASHGDPTRCKPYIAMICLQFGFAAIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYCAGLKFTSPTYSCAISNILPAMTFVMAVTFRMEKLDPEPM 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08496 312 MobiDBLite consensus disorder prediction 27 74 - -
Vifa1g08496 312 Pfam EamA-like transporter family 222 308 IPR000620 GO:0016020
Vifa1g08496 312 Gene3D alpha/beta hydrolase 86 184 IPR029058 -
Vifa1g08496 312 MobiDBLite consensus disorder prediction 27 95 - -
Vifa1g08496 312 PANTHER WAT1-RELATED PROTEIN 229 308 IPR030184 GO:0016020|GO:0022857
Vifa1g08496 312 SUPERFAMILY alpha/beta-Hydrolases 115 183 IPR029058 -
Vifa1g08496 312 Pfam alpha/beta hydrolase fold 140 182 IPR013094 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08496 Vifa-Chr1 1339519798 1339521965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08496 1 218 Carbohydrate Esterase AT3G27320 45.985 1.70e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08496 - - gmx:100775445 232.261