Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08495 ATGTGCAGAGACAGCACAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTCTGCCTTTGTCATCTTGGAATTATAATGCTAAACCACCAGCCAGTGTGCCACAACTGACTACAGATCACACGGGATGGACTGGATCTGGACAAGCTGCTCCTCTTAATTGTTGCAATAGCAGCAGTAATGACAGCACTCACCTTGCTTTGCCAAGTAGTAAAGGGATTAATCAAGGCAATGTGGGCAAGCCAGTTCATGTCATGCCAGATTTTGCACAAGTTGGTGTTCCGAGTGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGACGATGAGGAGCTTCTTGAACTAGTGGAGCTTGAAGTTCGGGAGCTTCTCACATCTTATGAGTTTCCTGGAGATGACATTCTGATTATCTCTGGTTCAGCGCTATTGGCATTGGAAGCGTTAATGGCAAACCCTGCCCTGAAACGTGGGGATAACCAGTGGGTGGATAAGATTTACCAGCTTATGGATGAAGTTGATAAGTATATTCCGATTCCTCAACGTCAGGTGGAACTCCCCTTTTTGCTTGCCATTGAGGATGTGTTTTCAATCACCGGTCGTGGAACAGTTGCCACTGGGAGAATTGAAAGAGGGACTGTTAAAGTTGGGGATGTTGTTGACCTTGTTGGTTTGAGGGAAACAAGGAACACTACAGTGACTGGTGTAGAAATGTTCCAGAAGATTTTGGATGATGCTATGGCTGGTGACAATGTGGGGTTGTTGTTGAGAGGAATTCAAAAGATCGATATTCAAAGAGGGATGGTTTTGGCTAAGCCGGGAACTATTACTCCTCACTCTAAGTTTAGTGCTATTGTGTATGTTTTAAAGAAGGAAGAAGGTGGAAGACACTCGCCGTTCTTTGCCGGTTATAGGCCTCAATTTTACATGAGGACTACAGATGTTATTGGAAAAGTTACATCTATTATGAATGACAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTGAAGATTGTGGTGGAACTCATTGTTGCCGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTAA 1128 0.445 MCRDSTDSSSVLGTPVTSLPLSSWNYNAKPPASVPQLTTDHTGWTGSGQAAPLNCCNSSSNDSTHLALPSSKGINQGNVGKPVHVMPDFAQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLTSYEFPGDDILIISGSALLALEALMANPALKRGDNQWVDKIYQLMDEVDKYIPIPQRQVELPFLLAIEDVFSITGRGTVATGRIERGTVKVGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVIGKVTSIMNDKDEESKMVMPGDRVKIVVELIVAVAIEQGMRFAIREGGKTVGAGVIGAIIE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08495 375 FunFam Elongation factor Tu 314 374 - -
Vifa1g08495 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 195 IPR027417 -
Vifa1g08495 375 FunFam Elongation factor Tu 182 310 - -
Vifa1g08495 375 SUPERFAMILY Translation proteins 181 277 IPR009000 -
Vifa1g08495 375 CDD EFTU_II 187 273 IPR033720 -
Vifa1g08495 375 Pfam Elongation factor Tu domain 2 201 269 IPR004161 GO:0005525
Vifa1g08495 375 Pfam Elongation factor Tu C-terminal domain 274 373 IPR004160 -
Vifa1g08495 375 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 274 374 IPR009001 -
Vifa1g08495 375 Gene3D - 83 179 IPR027417 -
Vifa1g08495 375 Gene3D Translation factors 314 374 - -
Vifa1g08495 375 CDD EFTU_III 276 370 - -
Vifa1g08495 375 Gene3D Translation factors 182 310 - -
Vifa1g08495 375 PANTHER ELONGATION FACTOR TU-RELATED 90 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08495 Vifa-Chr1 1339306137 1339308728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08495 84 373 Eukaryotic Initiation Factors Gene Family AT5G60390 24.756 1.33e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08495 K02358 - gmx:100793431 470.314