Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08479 ATGGGAACACCTGTGAACATCATTGTTGGATCACAGGTTTGGGTTGAGGATCCTGTGGTTGCATGGATTGATGGTGAAGTCACAAAAATCAATGGCAAAAATGCTACCATCATTACTACAGAAGGAAAAACTGTTGTAGCAGAAATTTCAAGTATATATCCTAAAGACACAGAGGCACCACCTGCAGGGGTTGATGACATGACCAAGCTAGCATACCTCCACGAACCCGGAGTATTGCATAACCTCTTGTGTCGTTTTTCGCTCAATGAGATATATACATATACAGGGAATATTTTAATTGCGGTGAATCCTTTTCGAAGACTACCGCATTTGTACGACAGTCATATGATGGAGCAGTACAAAGGAGCAGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTGTAGCAGACACATGTTACAGGGCAATGATGAATGAAAATGGAAGTCAATCCATTTTGGTAAGCGGAGAAAGTGGAGCCGGTAAAACTGAGACGACTAAAATGCTAATGAGATATCTCGCTTTCATGGGAGGTAGATCGAATACCGAAGGAAGGACAGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTGGAAGCGTTCGGAAATGCCAAAACTGTCAAAAACAACAACTCAAGTCGTTTTGGTAAATTTGTTGAAATTCAATTCGACAAGAATGGGAAGATTTCTGGAGCTGCTATCCGTACCTACCTCCTCGAAAGATCTCGCGTTTGCCAAGTTTCTGACCCGGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCTCCACCAGAGGATGTCAAGAAGTACAAGCTAGGAGATCCAAGGAAATTTCGCTATCTTAACCAATCAAGCTGTTATGAAGTGTCGAATGTAGATGATGCAAAAGAATACTTGGAGACGAGAAATGCAATGGATATTGTAGGCATCAACCAGGATGAGCAGGACGCTATCTTCCGTGTTGTAGCTGCAATCCTTCATCTTGGAAACATTGACTTCGTCAAAGGGAATGAGTTTGATTCGTCCAAATTAAAAGACGACAAATCCCTCAACCACCTTCGAACAGTTGCCGAGTTATTCATGTGTGACGAGAAATCACTAGAAGACTCGCTTTGTCAGCGTGTCATTGTTACCCCTGATGGCAACATTACAAAACCATTAGACCCGGATGCAGCTTCTTTGAGCCGAGATGCATTGGCAAAGACAGTATACTCCAGATTGTTCGATTGGATCGTGGACAAAATTAACAGTTCCATCGGTCAAGATTCTAATGCGGTAAGCCTAATAGGAGTCCTTGACATTTATGGATTTGAAAGCTTCAAAATCAATAGTTTCGAGCAACTATGCATCAACTTAACAAATGAGAAGCTGCAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATTAATTGGAGCTACGTAGAATTTGTCGATAATCAGGATGTTCTCGATCTTATTGAGAAGAAACCTGGTGGAATTATTGCTCTTCTTGACGAAGCGTGCATGTTTCCGAAATCAACTCATGAGACTTTTGCGCAAAAGATGTACCAGACATACAAAGGACACAAGCGATTCGCGAAACCAAAACTTTCTCGAACAGACTTCATAGTTAATCACTACGCCGGAGATGTCACATACCAGGCCGATTATTTTCTTGATAAGAATAAAGATTATGTCGTAGCTGAGCATCAGGCTCTTTTGTGTGCTTCAAAGTGTCCATTTGTTGCTAATCTTTTCCCTCCTTTACCCGAGGAATCATCAAAGCAATCGAAATTCTCTTCCATTGGCTCACAGTTTAAGCAACAACTTCAATCTCTGATGGAGACACTAAGCACCACAGAACCACATTACATAAGATGTGTGAAACCAAATACAGTTTTGCAGCCGGGAATATTTGAGAACTTCAATGTCTTAAACCAGTTAAGATGCGGGGGAGTTCTTGAGGCAATAAGGATAAGTTGTGCTGGATATCCAACAAAAAGAACATTCGAAGAGTTCCTTGATCGATTTGGAATGCTAGTCCCTGATGTCCTTGACGGATCCGACGAGAAAAAAGCATCTATTTCCATATGTGATAAGATGGGTTTAAAAGGCTATCAAATGGGAAAAACCAAGGTGTTTCTTAGAGCTGGTCAAATGGCTGAATTAGATGCACGAAGAGCCGAAGTCTTAGCTAAAGCAGCTAGACTCATACAGAGACAAATCCGAACACATTTAGCTCGAAAAGAGTTCATCACCATGAAAAAGGCCACAATCCGTATTCAGAAAACTTGGAGAGCAAAACTTGCACGGGAGATCTATGGAGATATGAGGAGAGAAGCAGCTTCTATACGGATACAGAAACAGGCACGTGCACATAGAGCAAGATTGTATTATACATCATTACAAGCATCCGCTATTGTTATTCAGTCAGGGTTGAGAGCATTTGCAGCACGAAACGAATATAGGTTTAGAAGAAGAACAAAGGCTTCAACCAAAATTCAGACACAATGGAGGAAAGTTCAAGCTCTTTGTACTTACAAGCAGCAGAAGAAATCAACTGTTACACTTCAATGCCTGTGGAGGGCTAAAGTAGCACGCAAAGAGCTCAAAAAGCTTCGAATGGCTGCAAGGGAAACCGGGGCACTTAAAGAAGCGAAAGACAAACTGGAGAAACGCGTCGAGGAGCTTACATGGAGACTAGATATTGAGAAGCACATGAGGGTTGACCTTGAAGAAGCTAAGGGGCAAGAGATTTTGAAACTGCAAAATGCGTTACAAGAAATGCAAGGTAAGCTAGATGAAGCTCATACAGCAATTATACATGAAAAAGAAGCCGCAAAAATAGCAATTGAACAAGCACCACCAGTGATAAAAGAAGTACCTGTTGTGGATAATACCAAGTTGGAGTTACTCACAAATAAAAATGAGAATCTAGAGAGTGAAGTAGAAGAGCTTAAAAACAGGATCAAAGATTTCGAAGAAAGGTATAAGGAAATTGAAAAGGAAAGTCAAGAAAGGCTGAAAGAGGCAGAAGAAGCACAGCTTAAAGCAACACAACTTCAAGAGACTATTGAAAGATTAGAATTGAGTTTGTCAAACCTTGAGTCAGAGAACCAGGTTCTTTGCCAGCAAGCTTTGGTAGAATCGAAAAACGAAGATCTCTCGGAAGATATTAAAATCCTCAAGGATCAAATAGCAAATCTAGAATCAGAGAATGAAGTTCTTCGGAGCCAGGCAGCAATAGCTGCTGTAGAGCAGAAAGTTCATCCAGAAAAACTAGAAACCGATCAGGAAGTTGTTGTCGAACATCAGATTCAACAACCAAGAACTATTGCAGATAACGCGACAGCGCAAATCAAGGACTTGGACAATCGAAATCAAGTAGATGAAGAACTGCATGCAAGAAAAGAAGCAAAAGTACCTGTTTCCGTTCTTACAAAGCAAAGATCATTAACAGAAAGACAGCAGGAAAGTCATGATGCGTTGCTCAAGTGTCTTACAGAAGATAAACGTTTCGAGAAGAACAGACCAGCAGTTTCTTGTATTGTTTATAAAGCACTTCTTCATTGGAGGTCCTTTGAAGCAGAGAAGACACAGATATTTGATAAAATTACTCACACTATCCGAACATCTATAGAGAATCAAGAAGGAATCAGTGATCTGGCGTATTGGCTTTCAACAACATCAACACTTTTGTTTTACCTACATTGCACACTAAAAGTCAGCAATACAACTAATACACTGTCGCGTAATCGTAATCGTAACTCTCCTGCCACACTTTTTGGCAAAATGGCACAGGGTTTACGTTCATCTTCAATGGGCATAGGGATATCGAGTGGTTACAGTGGCATGGCGGAAAAGCCAAATGAACAATCTAAAGTGGAAGCAAAGTACCCTGCTATTCTATTTAAGCAACACTTAACTGCATATGTGGAGAAAATATATGGAATGATCCGTGACAGTTTAAAGAAAGAGATTAGTCCATTCTTAAATCTTTGTATTCAGGCACCAAGATCCATAAGATCCAGATCGATAAGAGGGTCATCCAGAAACATCCATTCAAATATAGTTGCGAAACAACAAGCATTGCATATGCACTGGAAAGGCATTGTGAGCAAGTTAGATCATGCCTTTGGTATATTGTCTGACAACTATGTCCCTCCGATGATAACAAGGAAGATATTTAGTCAGGTTTTCTCGTACATGAATGTTCAACTATTTAATAGTTTGTTGCTTCGTCGCGAGTGCTGTTCCTTTAGCAATGGAGAATATCTGAAAGCAGGTTTGCATGAGTTGGAACTATGGTGTATAAAAGTAACCGATCAGTTTGCCGGGTCGTCTTGGGTTGAACTCAAACACATACGCCAAAGTGTTGGATTTCTGGTTTTGCATCAAAAGACTCAAAAATCTTTGGAGGAGATCACAAATGAACTATGCCCGGTGTTAAGTATTCCACAAATATATCGCATTGGAACCATGTTCTGGGACGACAAGTATGGAACACAAGGATTATCTCCAGATGTCATTAGCAGAATGAGAGTTCTTATGACAGAAGACTCAACAAACATACTCAATAACTCATTCCTTCTAGAAGTAGAATCCAGCATTCCATTCTTAATGGAGGAGTTGTTTCGGTCCATGAGCGACATTCGAATATCAGATATGGATGTGGATCCACCAACAATCCTTAGACAAAGATCTGATTTCCAATTCTTGTTGCAGCATATCGATAGTGACTCCCAGTGA 4758 0.405 MGTPVNIIVGSQVWVEDPVVAWIDGEVTKINGKNATIITTEGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLLCRFSLNEIYTYTGNILIAVNPFRRLPHLYDSHMMEQYKGAAFGELSPHLFAVADTCYRAMMNENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSNTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRKFRYLNQSSCYEVSNVDDAKEYLETRNAMDIVGINQDEQDAIFRVVAAILHLGNIDFVKGNEFDSSKLKDDKSLNHLRTVAELFMCDEKSLEDSLCQRVIVTPDGNITKPLDPDAASLSRDALAKTVYSRLFDWIVDKINSSIGQDSNAVSLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFAKPKLSRTDFIVNHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCPFVANLFPPLPEESSKQSKFSSIGSQFKQQLQSLMETLSTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLVPDVLDGSDEKKASISICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAARLIQRQIRTHLARKEFITMKKATIRIQKTWRAKLAREIYGDMRREAASIRIQKQARAHRARLYYTSLQASAIVIQSGLRAFAARNEYRFRRRTKASTKIQTQWRKVQALCTYKQQKKSTVTLQCLWRAKVARKELKKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHMRVDLEEAKGQEILKLQNALQEMQGKLDEAHTAIIHEKEAAKIAIEQAPPVIKEVPVVDNTKLELLTNKNENLESEVEELKNRIKDFEERYKEIEKESQERLKEAEEAQLKATQLQETIERLELSLSNLESENQVLCQQALVESKNEDLSEDIKILKDQIANLESENEVLRSQAAIAAVEQKVHPEKLETDQEVVVEHQIQQPRTIADNATAQIKDLDNRNQVDEELHARKEAKVPVSVLTKQRSLTERQQESHDALLKCLTEDKRFEKNRPAVSCIVYKALLHWRSFEAEKTQIFDKITHTIRTSIENQEGISDLAYWLSTTSTLLFYLHCTLKVSNTTNTLSRNRNRNSPATLFGKMAQGLRSSSMGIGISSGYSGMAEKPNEQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRSRSIRGSSRNIHSNIVAKQQALHMHWKGIVSKLDHAFGILSDNYVPPMITRKIFSQVFSYMNVQLFNSLLLRRECCSFSNGEYLKAGLHELELWCIKVTDQFAGSSWVELKHIRQSVGFLVLHQKTQKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGTQGLSPDVISRMRVLMTEDSTNILNNSFLLEVESSIPFLMEELFRSMSDIRISDMDVDPPTILRQRSDFQFLLQHIDSDSQ 1585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08479 1585 Coils Coil 876 910 - -
Vifa1g08479 1585 Coils Coil 972 1089 - -
Vifa1g08479 1585 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 FunFam Myosin heavy chain 252 307 - -
Vifa1g08479 1585 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Vifa1g08479 1585 Gene3D - 439 623 - -
Vifa1g08479 1585 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Vifa1g08479 1585 Gene3D - 252 310 - -
Vifa1g08479 1585 FunFam Myosin 2 312 428 - -
Vifa1g08479 1585 Coils Coil 723 743 - -
Vifa1g08479 1585 FunFam Class V myosin 439 578 - -
Vifa1g08479 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 882 IPR027417 -
Vifa1g08479 1585 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Vifa1g08479 1585 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 Coils Coil 1116 1136 - -
Vifa1g08479 1585 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 Gene3D - 784 831 - -
Vifa1g08479 1585 Gene3D - 732 783 - -
Vifa1g08479 1585 Gene3D - 832 881 - -
Vifa1g08479 1585 PANTHER MYOSIN 54 1510 - -
Vifa1g08479 1585 FunFam unconventional myosin-Va 833 880 - -
Vifa1g08479 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 784 IPR027417 -
Vifa1g08479 1585 Coils Coil 922 942 - -
Vifa1g08479 1585 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vifa1g08479 1585 Pfam DIL domain 1398 1501 IPR002710 -
Vifa1g08479 1585 SMART iq_5 756 778 IPR000048 GO:0005515
Vifa1g08479 1585 SMART iq_5 733 755 IPR000048 GO:0005515
Vifa1g08479 1585 SMART iq_5 852 874 IPR000048 GO:0005515
Vifa1g08479 1585 SMART iq_5 781 803 IPR000048 GO:0005515
Vifa1g08479 1585 SMART iq_5 804 826 IPR000048 GO:0005515
Vifa1g08479 1585 SMART iq_5 829 851 IPR000048 GO:0005515
Vifa1g08479 1585 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Vifa1g08479 1585 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Vifa1g08479 1585 Pfam IQ calmodulin-binding motif 759 775 IPR000048 GO:0005515
Vifa1g08479 1585 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Vifa1g08479 1585 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Vifa1g08479 1585 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vifa1g08479 1585 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g08479 1585 FunFam unconventional myosin-Va 785 832 - -
Vifa1g08479 1585 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Vifa1g08479 1585 SMART DIL_2 1397 1504 IPR002710 -
Vifa1g08479 1585 ProSiteProfiles Dilute domain profile. 1206 1522 IPR002710 -
Vifa1g08479 1585 FunFam unconventional myosin-Va 736 784 - -
Vifa1g08479 1585 CDD MYSc_Myo11 76 719 IPR036018 -
Vifa1g08479 1585 Gene3D - 667 729 - -
Vifa1g08479 1585 CDD MyosinXI_CBD 1157 1545 IPR037975 GO:0007015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08479 Vifa-Chr1 1335041653 1335050777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08479 116 1580 Myosins gene family AT2G31900 72.578 0.0 2196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08479 K10357 - gmx:100817933 2761.1