Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08464 ATGGAAGCAAAAGGTGGTGGAGAAGTTAGAAGGCTTCACATAATCTATTTTCTTAGTCATATGGGTGGTCATGCAGAACATCCTCATCTCATTCGTGTTCTTCATCTAGCTCGAAATGGTGTTTTTCTCCGAGATATTAAGAGATGGTTAGGTGAATTGAGAGGAAAGGACTTACCTGAATCATATGCATGGTCCTACAAAAGGAGGTACAAGAGTGGATATGTGTGGCAGGATTTAATGGATGACGACCTCATAACCCCCATTTCTGATAATGAATACGTCCTCAAAGGATCACAAATCCACACTACCCCTTTTGAAACTCATTCAATAAATCCAATCAAAGAAAAGAAGAATGGTTCTGATATAGCTGTGCAAGTTGAAGAGGGCAACAAACAAAAGCAGCAAAAGAAACCATCTTTATCAGAAGAAGAATCTGAAATTCGGAAAGAAACCGATACAAGAAAGAATAATCTGAACCATGTGTCATCAGAAATAAGTCAGGACTCATTGGTTTTCAGCTCGGACAGATCATCGGTGACCGATGACGATTCGTCTTCTAAAGTCGAAGAAGAGAAGCTTTTAGGGAATGGTAAAGAAAGTAGTTTGAGTGAAAAGAATCATGACAAGTTTGAGAGTTTCACATTTCCTTCTTTGTATCATAATTTGATGAGTAAGAAGGGTAAAAAAGATGGACATAATAACAAAACTGATACTACTACTACTACTACACCTCCTGATTCAACTTTGTCTACTCCAACTTCGTCGACGTCATCTCAATCCTCTTTTAATAAGATCAGAAGCAATTCTACTAGAGTTTCTAGTGTGTTCAGAAATATGATTGGTTGTGGAACTGTGGCTACAAATGATGCTGCTTTTGTCTCTATGAACCCGGCTCCGAAAACTCTCCCTAAAGAAACTAACAATGTGCTTGGAAAGAGGGGTGAGATTAATAGAGGAGACAAATTGGGAGGATCAGCTAGATGTTTTAGTACTTCTTGGAATTGCTATGAACAAAATGGACATTACGAAGCCCGAAAAAGCTGTGATGGAGGAGAAATAAGCAAGGGCAGGAAAAAGCTAAGCGAGTTAATGAATCAAACTTCTCATAAACCATTTGGGGGACCAGTTTGCTCGCAATGTGGGAAATCATTCAAGCCTGAGAAAATGCATAAACACATGATGTCTTGTAAAGGAATGAAAGGCATTGGAACTTCAACTATTGCTGAGGAAACACAACATAAGAGAACAACTTCATCTTGTAAAGATTACCTTTTGCAAAATTAA 1284 0.3832 MEAKGGGEVRRLHIIYFLSHMGGHAEHPHLIRVLHLARNGVFLRDIKRWLGELRGKDLPESYAWSYKRRYKSGYVWQDLMDDDLITPISDNEYVLKGSQIHTTPFETHSINPIKEKKNGSDIAVQVEEGNKQKQQKKPSLSEEESEIRKETDTRKNNLNHVSSEISQDSLVFSSDRSSVTDDDSSSKVEEEKLLGNGKESSLSEKNHDKFESFTFPSLYHNLMSKKGKKDGHNNKTDTTTTTTPPDSTLSTPTSSTSSQSSFNKIRSNSTRVSSVFRNMIGCGTVATNDAAFVSMNPAPKTLPKETNNVLGKRGEINRGDKLGGSARCFSTSWNCYEQNGHYEARKSCDGGEISKGRKKLSELMNQTSHKPFGGPVCSQCGKSFKPEKMHKHMMSCKGMKGIGTSTIAEETQHKRTTSSCKDYLLQN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08464 427 MobiDBLite consensus disorder prediction 180 205 - -
Vifa1g08464 427 MobiDBLite consensus disorder prediction 236 268 - -
Vifa1g08464 427 MobiDBLite consensus disorder prediction 158 179 - -
Vifa1g08464 427 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 5 416 IPR010369 -
Vifa1g08464 427 MobiDBLite consensus disorder prediction 130 157 - -
Vifa1g08464 427 MobiDBLite consensus disorder prediction 127 205 - -
Vifa1g08464 427 Pfam Protein SOSEKI, plant 13 313 IPR010369 -
Vifa1g08464 427 MobiDBLite consensus disorder prediction 224 268 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g08464 DUF966 4.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08464 - - gmx:100785001 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08464 1 1333903196 1333906088 Vifa1g08464 1 1333903196 1333906088 ECH