Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08455 ATGACGACGACGGCGCCGCCACCAACTCCGCCGTCACTCGAACTAAAAACCTACTGGTGCCACGAATGCGACATGAGCGTCTCTCTCACTTCCTCCCACTCTCCCTCTCCCTCTCCTCCCCTTTGTCCTCAATGTCACACTCATTTCCTCGAACTCATGGACTCCCCTTTCTCCCAAAACGACGCCGATTCGTTTCTCCATTCTTCCTCCTCCCTCTTCGACGTCGTTTTCCAAGACGCGCTTTTACTACTCGCACCCTCTCCCCGTAAAACGCACACCACCGAAACGATCCTTCCTATAATAACCGTTACAGAAACTCTTCTTTCGCTACTCGATCCAAACGGCGTCGTTTTATGCGCGGTTTGTAAGGACGCTATTTCCGTTGACGAAGAAGCGAAACAGCTTCCTTGTGATCATCTTTATCACTCCGATTGTATTACTCCCTGGCTTCGTCTTCGATCTTCTTGTCCTCTCTGTCGATTCCGAATCTCAGAGGATGAAAATGAAGATGAAAATGACGAAGATGATGAAGAGGATTTGAATGGTGCTGATGTGATGAGGGAGATGATGGCGCGGATGGCAGAGTTGTCGGAAGATGATTTCTATGGTCTGAGAATGACTCTCAATTACATTGCTTCCCGGCATGAACTTCTTCATTCTAATGCTTCAGGCGGCGGTGATCATCATGATGCTAGTAGTGAAGTTGGTGGAGATGTAGATGGAGAATCATGA 732 0.485 MTTTAPPPTPPSLELKTYWCHECDMSVSLTSSHSPSPSPPLCPQCHTHFLELMDSPFSQNDADSFLHSSSSLFDVVFQDALLLLAPSPRKTHTTETILPIITVTETLLSLLDPNGVVLCAVCKDAISVDEEAKQLPCDHLYHSDCITPWLRLRSSCPLCRFRISEDENEDENDEDDEEDLNGADVMREMMARMAELSEDDFYGLRMTLNYIASRHELLHSNASGGGDHHDASSEVGGDVDGES 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08455 243 SUPERFAMILY RING/U-box 118 166 - -
Vifa1g08455 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 177 IPR013083 -
Vifa1g08455 243 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Vifa1g08455 243 Pfam Ring finger domain 119 160 IPR001841 -
Vifa1g08455 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 162 - -
Vifa1g08455 243 MobiDBLite consensus disorder prediction 221 243 - -
Vifa1g08455 243 SMART ring_2 119 159 IPR001841 -
Vifa1g08455 243 Pfam zinc-ribbon 17 53 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08455 Vifa-Chr1 1330714317 1330715048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08455 13 175 C3H Transcription Factor Family AT2G44330 31.176 4.94e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08455 K11982 - gmx:100775530 232.261