Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08442 ATGGAAGTTGAATACCAGTGGGTGATGGGTAAGTTATGGTGGACAATTGGGTTGATAGTGATAAGCAGGGTTGTAATATTGTTGGAGAAAGTGTTGTTTAAGCCAAGAAGGATTCGGTCAGTGATTGAAAAACAAGGTATCAATGGACCAAAGCCATGTTTTCCCTATGGCAACATTTCTGAGATGCAGAAAATTTGTCCTCAACCTTCTGCATCTGCTGATCCGTATCAGGAATGGATTCATTCCCTGTTCCCATATTTCCAAACCTGGAAACAACGCTATGGTTCAGTTTATCTATACTCTACCGGACTGAAACAGCATCTATATGTGGGGAAGCCAGAACTAATAAAAGACATAAACCTGCACACGTCCTTAGATCTAGGCAGGCCTTCGTATCTAAGCAAACCATTAATGCCAATGCTTGGAAATGGCATCCTCAGAGCCAATGGACAACTATGGTCTTTCCAGAGAAATCTTATTGTTCCTGAGTTCTTCATGTCCAAAATTAAGAACATGATAGATATTATGGAAGAATCCACCTTAACAATTATCAAAAAGTGGGAGAGGTGTATAACCGAAAATAAAGAAAAGATTGCAGAGATAGGGATTGAAGTTGATTTGAAGATTCTTACAGAAGATATTATTTCAAAAGCTTGTTTTGGAAGCGATTATGAACAAGGAAAGCAAATATTTTCAAAATTGAAAGATATGCAAGCTGCACTTTCAAAGCCTAGTATACTTTTTGGATTTCTAAACCTAAGTTTTTTTCCAACTAAGGAAAGCAAAAAGATGTGGAGGTTGAAGAAAGAGGTGGACGAGTTGGTTATGAACATCGTCCACAATCGTGAAATACAAAACCGAGAGAACAATGTAAATGAGAAACGAGGTGATCTATTACAAAAAATACTAGAAGGTGCTGCAAGTGGCGCAACTTCAAACAACGTCGGGCAGAACAAGAATCCGATAATTATAGATCTCTGCAAAAATATATACTTTGCTGGCTCTGAGTCAACTGCTCTTGCAATTTCTTGGACATTGTTGCTCCTTGCATTACATCCAGAATGGCAACAACGCGTTCGATCTGAAATTTTGGATACTTTCGATAACGGTTCACCTCATTTTGTTGACGACTCTAGCAAATTTCAAAAATTGAAAGTGCTAACAACTGTGATTCAAGAGAGTTTACGTCTTTACGGACCTGGAGTGTTTGCGACAAGGGAAGTTTTAGCTGATATGAAGTTGGGAGAATTCATGCTCCCTAAAGCTTGTAAGCATCCTCAAGCGTATATACCATTTGGACTTGGGAGTCGAAGTTGTCTCGGTCAAAACTTTGCCATTACTCAAATGAAGATAATACTCAGTCTTCTTATTTACAATTTCTCGTTTGAGGTTTCGCCAAATTATAGGCATTTTCCTGTCTATAATATGTTGTTGATGCCAAAATATGGACTGAAGCTTCTTGTTACCAAGGTTGATAGATCAGGAAAATGA 1491 0.3823 MEVEYQWVMGKLWWTIGLIVISRVVILLEKVLFKPRRIRSVIEKQGINGPKPCFPYGNISEMQKICPQPSASADPYQEWIHSLFPYFQTWKQRYGSVYLYSTGLKQHLYVGKPELIKDINLHTSLDLGRPSYLSKPLMPMLGNGILRANGQLWSFQRNLIVPEFFMSKIKNMIDIMEESTLTIIKKWERCITENKEKIAEIGIEVDLKILTEDIISKACFGSDYEQGKQIFSKLKDMQAALSKPSILFGFLNLSFFPTKESKKMWRLKKEVDELVMNIVHNREIQNRENNVNEKRGDLLQKILEGAASGATSNNVGQNKNPIIIDLCKNIYFAGSESTALAISWTLLLLALHPEWQQRVRSEILDTFDNGSPHFVDDSSKFQKLKVLTTVIQESLRLYGPGVFATREVLADMKLGEFMLPKACKHPQAYIPFGLGSRSCLGQNFAITQMKIILSLLIYNFSFEVSPNYRHFPVYNMLLMPKYGLKLLVTKVDRSGK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08442 496 PANTHER CYTOCHROME P450 FAMILY MEMBER 425 483 - -
Vifa1g08442 496 Gene3D Cytochrome P450 35 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 SUPERFAMILY Cytochrome P450 79 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Vifa1g08442 496 Pfam Cytochrome P450 424 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g08442 496 Pfam Cytochrome P450 83 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08442 Vifa-Chr1 1326880549 1326883122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08442 115 488 Cytochrome P450 AT5G24900 36.867 4.23e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08442 - - gmx:100802008 572.392