Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08441 ATGGAACTTGGTTTAACCTTAGGAGACTCTTCAAAGCCTCTAATTGGCTTAATGGAAAACCACCCTCATCAAGCTTCTAAAGAACTTGGTTTAGGCTTCAACACCACTTTATCAATTGGTCCAAACATCACTACTCAAAGAGATCAACTTCAACAAGAAGAACAAAACACTAGAACTGAAAATTTGCATCAACTTGATCTTCTTCCTCAACTCTCCTTCCCATGGAATCCTCTTTCCCAAAATGAGTTTGGAGTTTCATCAAGGGACTTGGTGGTGAACGTAGTTCAACCGATAACCACCGTGCCTATGGCGGAAGATGAGACTGTTCTTTCATCGTCACCTAACAGCGCAGCATCTTCTTTTCAGATGGATCTCTGTATATACAGTAGAGGTGGAAGTGGTTGTGGTGGTGGCGGTGGCGGTGGTGGGAGTTTGAGTGGCTCAGGCGATGGTGAAGGTTATGATCAAAGAAATTCTTCAAGAGTTAGTGATGAAGATGATAACAGTGGCGTTGGAAACACTAGGAAGAAACTTAGGCTCTCAAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCACACTCTTAATCCTAAACAAAAACTTGCTCTTGCAAAACAACTGAATCTTCGACCTCGTCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTAGATTGTGAATATTTAAAGAGATGTTGTGAGACACTAACAGAAGAGAATAGAAGACTACACAAGGAGCTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAATTACCAGCAACAACTTTAACTATGTGTCCTTCTTGTGAACGTGTTGCGACGAATTCTACAGCAACTTCTTCCGTCACTAATAATACAAGTGCTACTATCAATGCTAACAACAAAACTAGTGATGATTCGACTTCAAAGGTTAATGTTGGATTTCCTTTTGGAAAATCAAAGTTTCAGCCAACAACAAAATCTTGA 1014 0.3964 MELGLTLGDSSKPLIGLMENHPHQASKELGLGFNTTLSIGPNITTQRDQLQQEEQNTRTENLHQLDLLPQLSFPWNPLSQNEFGVSSRDLVVNVVQPITTVPMAEDETVLSSSPNSAASSFQMDLCIYSRGGSGCGGGGGGGGSLSGSGDGEGYDQRNSSRVSDEDDNSGVGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNNTSATINANNKTSDDSTSKVNVGFPFGKSKFQPTTKS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08441 337 Pfam Homeodomain 175 229 IPR001356 GO:0003677
Vifa1g08441 337 FunFam Homeobox-leucine zipper protein 18 158 236 - -
Vifa1g08441 337 Gene3D - 179 229 - -
Vifa1g08441 337 SMART HOX_1 173 235 IPR001356 GO:0003677
Vifa1g08441 337 Pfam Homeobox associated leucine zipper 231 265 IPR003106 GO:0006355|GO:0043565
Vifa1g08441 337 MobiDBLite consensus disorder prediction 137 178 - -
Vifa1g08441 337 Coils Coil 244 267 - -
Vifa1g08441 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 311 - -
Vifa1g08441 337 MobiDBLite consensus disorder prediction 157 178 - -
Vifa1g08441 337 SUPERFAMILY Homeodomain-like 164 232 IPR009057 -
Vifa1g08441 337 SMART halz 231 274 IPR003106 GO:0006355|GO:0043565
Vifa1g08441 337 ProSiteProfiles 'Homeobox' domain profile. 171 231 IPR001356 GO:0003677
Vifa1g08441 337 CDD homeodomain 175 232 IPR001356 GO:0003677
Vifa1g08441 337 ProSitePatterns 'Homeobox' domain signature. 206 229 IPR017970 GO:0000981|GO:0006355
Vifa1g08441 337 MobiDBLite consensus disorder prediction 300 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08441 Vifa-Chr1 1323960640 1323962026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08441 160 288 Homeobox Transcription Factor Family AT4G37790 77.692 4.52e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g08441 Homeodomain 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08441 K09338 - gmx:100805312 388.267