Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08434 ATGGAAAACCACCAAAACCAAAACAAAAACCTAAACCAAGACCACCAAGAACAACAACACCATGCTTGGGACACGTGGGAAGAGCTTCTACTAGCCTGCGCCGTCAACCGCCATGGCTTCAAAGACTGGGACACCGTCGCCATGGAGGTTCAGTCACGAACCAACCGCCCCACGCTCCTCGCCACCGCTCACCACTGCGAACAGAAATTTCACGATCTAAGCCGTCGATTCACCGATGACGCTCCTCCGCCGCAACAGAATGGGGACGCCTCCGATCATGTCCCCTGGCTTGACAAATTGCGGAAACAACGCGTTGCTGAGCTCCGGCGTGATGTCCAACGCAGCGACGTCTCCATTTTGTCGCTGCAGTTGCAGGTGAAGAAGTTGGAGGAAGAGAAAGCGAAAGAAAATGGCAGAGAAGAAGATAAAAAACCAGATCTGGTTGTTACGGCGGAGGAAGAGCGGCCGCGGCCGGAAAAAGATAAAACCGGTGGAGAAATGGAAGAGGCTAAACCAGCGAATTCCGAACCGGATATTCGCCGGCTTGAGGAAAGCACAACTAATACTGATAAGCTGTTACCAACAACAGGGGATGAATCGGACCGAGACAATCAATCGGTTAATGAGTCGAACTCAACCGGTTCGAGGTTTGATGCAGCGAAAACCAGTGAGGTTGATGTAAAACTAGAACCCGTTCCGGTTCCCGTTCCGGTTCATTCCGGTTTGAAAGAACCGGATCAGACCATTAGAAAGAAAAAATCGGTTGAAGAGGAATCGAATAACGGAAGCTATGATAACGATAACGAGGCTAAAGTTCTTACGTGTGAGTCGGTTCCTCCGAGTGAAGAGAGGAAGGTGGAGGGTGACTCGTCCGAGTTGCATGACTCGGTGACTCACTCGGAGGAGGGAGGGACGAGAGAAAGCAGCGAGGTCCAGAGTTCTTCGAGTTTGACGAAAACGAGGAAGTTGCGGCGGAAGAGGGAGGCTTCGGGCAGAGAAGTTTTGCCAGAGAATGAGGACGTAGTAGCGACGGTGAAATCTGAACCGTTGATTCATGTCTTGGAGATGATTAAAATACATGAAAAATTTTCATTATTTGAGCGCCGTCTTGAAAAAAATCAGGATTTGGATAGATACAGAGACATTGTGAGACAGCACTTGGACTTGGAAACCATACATTCGAGACTCCTAAAGGGTCACTATTCCTCATGCGCTAACACATTCTTCCGTGACCTCCTCCTTCTCTTCACCAACGCCACTGTTTTTTTCAATCATGACTCAACCGAATCGCGGGCGGCACAGCAGCTGCTGCGCCTTGTCATTGCTGAGATGAGAAGCTGCGGCCAAGCACAGTCTGATCCTGTCACCCAAAAGAATGATTCACTTCCTCCAAACCCACCATTATCCAAACCAGATTCTGTTCTTCCCAAGCATAAAACCTCTGCTCCTATAATAGTTTGCCGCAAACGCAGTTCAATCTCAGGTAAACCGTCCACATCCACGTTTAGCCAAAAGGGTGATCAGTCCATCAACAATGACAAGAAGGAAAGATCATCTTCAGATGCCAAACCAACCTTGAAACAAAATTATTCTGAGACAGACGAAGACGAGCCTCCCAAGGCCAAGGAAAAGCCTGTCACTGGAGCCAGAAGTAGAAGAAGCAGCAAGAGTCACAACAGTAACACTGGTGATAAGAAACTACTCTCTAACTCCACTCATAAAACAGGGTCCTCAGCAAACAAGCCAGTCGAGACCCCGAAATTGGATAAGAACAAATCAGAAGGGATGTCAGACAAGAAGAAGAATGCTGCTGCCGATTTCTTGAAGAGAATAAAGCGAAATGCATCAGCGGAGGTGATGAGAAGTGGAAGTGGCGGTGGAGGAGGAAGTAGTGGCAGCAGTAAGGGTGGTGGAGGTGGTGCTAGTATGAAAGATCAGAAGAAAATAGTGAGTAGTGGAAAGGCGGAGAAAGGGAAAGAAAGATCTTCAAGGTATGATGATGGAGGAGGGTCAGGGTCAGGGGATAAGCGGAATAAGAATCTTGACCACAGCTCTCAGTCGAGGCGGAGTGTTGGGAGACCTCCAAAGAAAGCAGAAACCAGCGTAATCAAGCGCGGAAGGGAAAGTAGTGCAAGTGGAGGGAAAGATAAGCGACCGAAAAAACGTTCAAAGAAATGA 2178 0.4853 MENHQNQNKNLNQDHQEQQHHAWDTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPTLLATAHHCEQKFHDLSRRFTDDAPPPQQNGDASDHVPWLDKLRKQRVAELRRDVQRSDVSILSLQLQVKKLEEEKAKENGREEDKKPDLVVTAEEERPRPEKDKTGGEMEEAKPANSEPDIRRLEESTTNTDKLLPTTGDESDRDNQSVNESNSTGSRFDAAKTSEVDVKLEPVPVPVPVHSGLKEPDQTIRKKKSVEEESNNGSYDNDNEAKVLTCESVPPSEERKVEGDSSELHDSVTHSEEGGTRESSEVQSSSSLTKTRKLRRKREASGREVLPENEDVVATVKSEPLIHVLEMIKIHEKFSLFERRLEKNQDLDRYRDIVRQHLDLETIHSRLLKGHYSSCANTFFRDLLLLFTNATVFFNHDSTESRAAQQLLRLVIAEMRSCGQAQSDPVTQKNDSLPPNPPLSKPDSVLPKHKTSAPIIVCRKRSSISGKPSTSTFSQKGDQSINNDKKERSSSDAKPTLKQNYSETDEDEPPKAKEKPVTGARSRRSSKSHNSNTGDKKLLSNSTHKTGSSANKPVETPKLDKNKSEGMSDKKKNAAADFLKRIKRNASAEVMRSGSGGGGGSSGSSKGGGGGASMKDQKKIVSSGKAEKGKERSSRYDDGGGSGSGDKRNKNLDHSSQSRRSVGRPPKKAETSVIKRGRESSASGGKDKRPKKRSKK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08434 725 MobiDBLite consensus disorder prediction 75 95 - -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 492 508 - -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 649 686 - -
Vifa1g08434 725 Pfam Myb-like DNA-binding domain 22 54 IPR001005 -
Vifa1g08434 725 ProSiteProfiles Bromodomain profile. 358 430 IPR001487 GO:0005515
Vifa1g08434 725 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 10 725 - -
Vifa1g08434 725 Pfam Bromodomain 354 434 IPR001487 GO:0005515
Vifa1g08434 725 MobiDBLite consensus disorder prediction 244 260 - -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 692 716 - -
Vifa1g08434 725 SUPERFAMILY Bromodomain 346 446 IPR036427 GO:0005515
Vifa1g08434 725 MobiDBLite consensus disorder prediction 509 550 - -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 132 336 - -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 278 306 - -
Vifa1g08434 725 SMART bromo_6 339 449 IPR001487 GO:0005515
Vifa1g08434 725 SMART sant 19 76 IPR001005 -
Vifa1g08434 725 Coils Coil 1 21 - -
Vifa1g08434 725 CDD Bromodomain 344 444 - -
Vifa1g08434 725 Coils Coil 112 139 - -
Vifa1g08434 725 CDD SANT 22 54 IPR001005 -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 132 187 - -
Vifa1g08434 725 Gene3D - 11 80 - -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 552 584 - -
Vifa1g08434 725 SUPERFAMILY Homeodomain-like 17 55 IPR009057 -
Vifa1g08434 725 MobiDBLite consensus disorder prediction 585 616 - -
Vifa1g08434 725 Gene3D - 339 455 IPR036427 GO:0005515
Vifa1g08434 725 MobiDBLite consensus disorder prediction 450 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08434 Vifa-Chr1 1321556513 1321560519 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g08434 Bromodomain 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08434 - - gmx:100811021 836.639