Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08431 ATGGCATTGGAACTTGTAGGTGGAGCTTTCTTAGAGGCTGGTTTTGCTGCTTTGCTTGGAAAAATAGCATATCCTGCAGTAGTTGCATTCTTTAAGAAAAATCAAAGCAGTGTCACCTTGCTCAAGAGGTTGAAGATCTCTTTGTTGTCCATTGATGTTGTGCTCAGTGATGCAGAGGAAAAACAAATAACAAATGCCTATGTGAAAGAATGGATGGAGGAACTCAAAGATGTTGTATTTGATGCTGATGATGTAATGGATGAGATTTGTACTTATGCAAAGATGAATGAGGTAATAATCAACAACCCTGATTTTGTTGCTCCTTTTAATTTGCATGATGCTGAACTGGAACAGAAAGTACGAGACATAATTGAAAGATTAGACTTTATCATAAAACAAAAAGATATGCTTCAACTGCAAATGGTTAAAGAAGTTAAAATCCCACCAAAGTTTCCAACTTCATCAGTAGTGGGATCAAGTGATGTGTATGGTAGGGATGATGATAAAGAGGCTTTGATGAAGTTGCTGTTTTCTGATGATCCGGAAGGTGAATGTAATATCAGTGTGATTCCTATAGTTGGTATGGGGGGAATTGGAAAGACCACGTTAGCGAAGTTTGTATACAATGATGAAAGAGTGCAGAGGGAGTTTGATGTCAAAGCTTGGGTTTATGTGTCTGAGAAGTTTGATGTTATCAAGATTACGAAAACACTTGTGGAAGAGATCACTTTGTGCAGTTGCAGTATTGAAGAGCTGAATTTACTTCAACGAGATTTGAAGAAACGGTTGATAAAGAAAAAGTTTTTGATTATCTTAGATGATGTTTGGAATCAAAACTACATTAAGTGGGAAACTTTGAAGAATCCTTTTGTGTATGGGGCTCCGGGAAGTAAGATTATAGTAACAACAAGAATTGCTCATGTGGCATCAATTATGCAGACGGTTAAGCCTTATTATCTTTCAGAGCTGAGTGATGATGATTGTTGGATGCTGTTTTCGAAACATGTGTTTGGAAGATATGCAAATTCAAATGCTCATCAGAATTTAAGAAATATCGGTAAAAAAATAATTAAAAAGTGCAAAGGGTTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGATCTAAAGATGATACAAAGGAATGGTACAAAGTATTGAACAGTGAGATATGGGATTTGCAGGATGATGAGAGTAATATTCTCCCAGCTTTGAGGTTAAGTTATCATTATCTTCCATCAAATGCGAAGAGATGTTTTGCTTATTGTTCAGTTTTTCCAAAAGATTATGAATTTGAGAAGGAGAAGTTGATATTACTGTGGATGGCAGAAGGTTTGCTACAACCACTGAGGAGACACAAGAGAATTGAAGAAGCTGGAGATGAGATCTTTAGCGAACTAGTGTCTAGATCGTTTTTTCAGCAGTCGAAACGCAATAAGTCGTGTTTTGTAATGCACCATTTTGTGAATGATTTAGCTCAATTTGTATCTGGAAAATTTTCTGTCAGAGTGGAAGGAAATTATGATGAAGTGGAAGAAAGTGCTCGATATTTGCTGCATTTGATTGCACATAAATTCCCTGCCGCGCATTGGAAGACTATTAGCAAAGCTGTTCATCTAAGAACCTTCATGGAACTAAGGTTGGTCGATAAATCTGTGAGCTTTATTGATGAGGTTCCACATGACTTGTTGATCAAGCTAAAATGTTTAAGGGTGTTATCTTTGGAAGGCATCTATCTTAAAGGGTTGCCCGATTCAGTTACCAAGTTAATACATCTTCGGTATCTGGATCTTTCTGGGGCTAAAATGAACATGTTGTGGGAAAGCATTGGTGGTTTGTACAATTTGGAAACTCTGAAGCTAGTTGGATGTTCTAACCTACAACAACTTCCTAAAGACTTCCATAAGCTGGTTAACCTGCGGTACTTAGATATTACTCGCACGCGTTTGAAATGGATGCCATTGCATATGAATGCATTGACAAACCTACAAAATCTAAGCGACTTTTTTGCAGGAAAAGAATATGGATCTTCAATTGCTGAGCTAGGAGAATTATCTGATTTACATGGATCATTGTTCATTCACAATTTCGAACATGTTAGCTTTGTGGATTCAGGAAAAGCCATGTTGAGTAAAAAGGAATTTCTTGAAAAGTTAGTTTTGGAGTGGAACGAGAATGGTGATACAGATAATTCACAGCAAGAAAAAGACATACTAGACCGGTTAGAACCACATACAAATCTTAAAGAGCTTTCTATATATAACTATCTAGGGACAGAATTTCCTAGTTGGGTGGGAGACTCTTGTTTTTGCAACTTGTTGTTCATGGATCTTAAGGGTAGCAAATATTGCTATAAATTACCTCCACTTGGACAACTTGGTTCTTTAAAAGAGTTACGGATTGCTCAATTCGACGGATTAGTGAGTTTGGGATATGAGTTTTACGGGGATGCAACTCAGAGCTTTGGTTCCTTAGAAACTCTTAGGATTGAGAACATGTCGTCGTGGGAGGAATGGCAGCATCCTAATGAGGCTAACAAAGCTTTTGCGGTACTGAAAGAACTTCATATAAATAGTTGTCCTAGATTGATAAAAGATTTACCTATTAACCTTCCATCTTTGACATTACTTGTCATCAGAGATTGCAAGAAGCTCGTTTCTTCATTTCCAACAACTTCGGCTCTTCGGGTGCTTAACATTGACAACTGCGGGAACTTAAAGTTCCCGGCACGTGTTTACCAGTTTCACCAGACACTTACATCCTTGTACTTGCACAATAGTTTTGATTCACTTGAGCTATTGGCTTTAGATATATTTCCTAACCTCAAGTCCCTGGATGTTTCTGGTTGTAAAAATCTGAAAGCATTTACAGTTTCAAGCACAATGAGACTCCGTCGTCCAATTCTTGCATCGCTGCGTTCCTTGTTCATAAGTAACTGTCCAAAGTTGGTAACCTTTCCAATAGAAGGGTTCTTTGCCCCAAAGCTGGCGATGTTGAATATTGACTACTGCGAGGAGCTCAAGTCCCTGCCACCAAAAATGGATCAGCTTTTGCCAGGCTTGATAGAACTCCAACTATGGAGATGCCCTCAAATTCAGCCAATTGAGAAGTGGCCATGTGATTTAAGATCAGTCAGAATCTGGAACTGTGACAAACTCATTGCCCGTCACTTAGAGTGGGATCAATCCAATCCTCTCCATTTTACAGACTTGACAATGTCGGGGGCTTTCACTGTCAAATCTGAAGAGTACTGCTCAACAATTGCCAGTTCAACTCTTGGCTCTGGTAGGCGAGCACTATCAAGCTCTTCTCAGAAAAAATCATTTTCTAAAAGAGTGTTCAGATGA 3348 0.3847 MALELVGGAFLEAGFAALLGKIAYPAVVAFFKKNQSSVTLLKRLKISLLSIDVVLSDAEEKQITNAYVKEWMEELKDVVFDADDVMDEICTYAKMNEVIINNPDFVAPFNLHDAELEQKVRDIIERLDFIIKQKDMLQLQMVKEVKIPPKFPTSSVVGSSDVYGRDDDKEALMKLLFSDDPEGECNISVIPIVGMGGIGKTTLAKFVYNDERVQREFDVKAWVYVSEKFDVIKITKTLVEEITLCSCSIEELNLLQRDLKKRLIKKKFLIILDDVWNQNYIKWETLKNPFVYGAPGSKIIVTTRIAHVASIMQTVKPYYLSELSDDDCWMLFSKHVFGRYANSNAHQNLRNIGKKIIKKCKGLPLAVKTLAGLLRSKDDTKEWYKVLNSEIWDLQDDESNILPALRLSYHYLPSNAKRCFAYCSVFPKDYEFEKEKLILLWMAEGLLQPLRRHKRIEEAGDEIFSELVSRSFFQQSKRNKSCFVMHHFVNDLAQFVSGKFSVRVEGNYDEVEESARYLLHLIAHKFPAAHWKTISKAVHLRTFMELRLVDKSVSFIDEVPHDLLIKLKCLRVLSLEGIYLKGLPDSVTKLIHLRYLDLSGAKMNMLWESIGGLYNLETLKLVGCSNLQQLPKDFHKLVNLRYLDITRTRLKWMPLHMNALTNLQNLSDFFAGKEYGSSIAELGELSDLHGSLFIHNFEHVSFVDSGKAMLSKKEFLEKLVLEWNENGDTDNSQQEKDILDRLEPHTNLKELSIYNYLGTEFPSWVGDSCFCNLLFMDLKGSKYCYKLPPLGQLGSLKELRIAQFDGLVSLGYEFYGDATQSFGSLETLRIENMSSWEEWQHPNEANKAFAVLKELHINSCPRLIKDLPINLPSLTLLVIRDCKKLVSSFPTTSALRVLNIDNCGNLKFPARVYQFHQTLTSLYLHNSFDSLELLALDIFPNLKSLDVSGCKNLKAFTVSSTMRLRRPILASLRSLFISNCPKLVTFPIEGFFAPKLAMLNIDYCEELKSLPPKMDQLLPGLIELQLWRCPQIQPIEKWPCDLRSVRIWNCDKLIARHLEWDQSNPLHFTDLTMSGAFTVKSEEYCSTIASSTLGSGRRALSSSSQKKSFSKRVFR 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08431 1115 Gene3D - 142 316 IPR027417 -
Vifa1g08431 1115 Gene3D Ribonuclease Inhibitor 531 927 IPR032675 -
Vifa1g08431 1115 Pfam NB-ARC domain 166 409 IPR002182 GO:0043531
Vifa1g08431 1115 Gene3D - 408 495 IPR036388 -
Vifa1g08431 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 423 IPR027417 -
Vifa1g08431 1115 PANTHER DISEASE RESISTANCE PROTEIN RP 41 1023 IPR044974 GO:0006952
Vifa1g08431 1115 Gene3D - 322 407 IPR042197 -
Vifa1g08431 1115 Gene3D - 35 134 - -
Vifa1g08431 1115 FunFam Probable disease resistance protein At1g63360 409 495 - -
Vifa1g08431 1115 Pfam Rx N-terminal domain 38 95 IPR041118 -
Vifa1g08431 1115 FunFam Probable disease resistance protein At1g61300 148 317 - -
Vifa1g08431 1115 PRINTS Disease resistance protein signature 189 204 - -
Vifa1g08431 1115 PRINTS Disease resistance protein signature 360 374 - -
Vifa1g08431 1115 PRINTS Disease resistance protein signature 937 953 - -
Vifa1g08431 1115 PRINTS Disease resistance protein signature 262 276 - -
Vifa1g08431 1115 SUPERFAMILY L domain-like 517 951 - -
Vifa1g08431 1115 Gene3D Ribonuclease Inhibitor 968 1075 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08431 Vifa-Chr1 1320486489 1320489836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08431 186 694 WRKY Transcription Factor Family AT5G45050 25.045 4.22e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08431 - - vum:124831962 1148.65