Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08424 ATGGCTGTTAGAAGAAGAAACGCGCTTATTCTCATAAGCACTTTTTCAAATAATTTCTCCACCATTTCTCATCATCATCACACTTCTCATTACAGAAAACAAATCTCCCTCGCTAATCTCTTCCAATCCTTCGGTTTCCCCTCCTCCATCCTTCACCGTTTCCTCTCCCACAACAACTTCCTCCTCAACTCCGATCCATCACAGCTTCGCAATTCACTTTCCACTCTCTTTTCCTTCCGAATCCCACAGAAAACCCTAATTTCACTCGTTCACGATTGCCCTTCTGTCTTAGAACCCCAATTTCTACATAATTGGGAATCAGCTTTTCCAAAATTCAAATCCAACGCCTTTAACCCTTCCCCGTTGATGATCGCAAGCTTGTTGCGTTGTTCTAGAAAATTCCAGTTAAACCCACTTCAACTCTCCCTGAAAGTTAAAATTTTTAAGGGTTTAGGGTTTTCTGACGATGTTACAGCTAGGGTTTTGGAAGAGTTTCCCAGCGCGGTTGTGATGAGTGAGGATAAAATTGTTGGGGTAATTGATTTTCTAGTGGAATTCAGTGTTCCGAGAGATGAAATCGACAGAGTTGTTAGATTGTATCCTAGGGTTTTGGGATTTGGAGTTGAAGATAGGTTGAAGCCGCTGATTCATGAGATGAGGGGTTTAGGGTTTTCTCGACGCGAGATTAAGGCAGAGGTTGTTAGGGATCCCGGTATTCTGGGAATGGAGATCGGGGAGTTTTCGCGGTGTTTGAAGCTTTTGCATAGTTTGAAATGCAGGGAGGCAATTAAAGAGAGTATTCTGGGGGATGGTTTGGTTAGGGCTTGTTTTGGAGTGAAACTGCGAGTGGATTGTTTGTGCGGTCACGGTTTGATTCGGAGGGATGCTTTGAAGGTGTTATGGAAGGAACCGAGGTTGATGAGTTATGATTTGGAGGATATTGAGAAGAAGATTGAGTTTTTAGTTCAAAGGATGAAGTATGGTGTTGATTGTTTGCATGAAGTTCCGGAATATTTGGGTGTGAATTTTGAGAAACAGATTGTTCCTAGATACAATGTGATTGAGTATTTGAAAGGGAAAGGTGCAATTGGGTTTGAAGTTGGATTGAAGGATATTATCAAACCAACTAGGCTTAGATTTTATAATCTTTATGTTAAGCCTTATCCAGAATGTGAAAAAATATATGGCAGATTTTCAGGTAAGGTTCAAGTTAAAAGAAAGCATCCGGATGGACTTTGGAAGCTGTTCAAACCACAGAAGTTTCATCAAACCAGTAAAGATGTGAAGAACATGAAGGCTTTTATGGACTCTTCACTGGTGTAG 1323 0.4104 MAVRRRNALILISTFSNNFSTISHHHHTSHYRKQISLANLFQSFGFPSSILHRFLSHNNFLLNSDPSQLRNSLSTLFSFRIPQKTLISLVHDCPSVLEPQFLHNWESAFPKFKSNAFNPSPLMIASLLRCSRKFQLNPLQLSLKVKIFKGLGFSDDVTARVLEEFPSAVVMSEDKIVGVIDFLVEFSVPRDEIDRVVRLYPRVLGFGVEDRLKPLIHEMRGLGFSRREIKAEVVRDPGILGMEIGEFSRCLKLLHSLKCREAIKESILGDGLVRACFGVKLRVDCLCGHGLIRRDALKVLWKEPRLMSYDLEDIEKKIEFLVQRMKYGVDCLHEVPEYLGVNFEKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRLRFYNLYVKPYPECEKIYGRFSGKVQVKRKHPDGLWKLFKPQKFHQTSKDVKNMKAFMDSSLV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08424 440 PANTHER CGI-12 PROTEIN-RELATED 54 388 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 Pfam mTERF 48 248 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 Pfam mTERF 282 375 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 FunFam Transcription termination factor MTERF15 mitochondrial 173 395 - -
Vifa1g08424 440 Gene3D Transcription termination factor 3, mitochondrial 177 398 IPR038538 -
Vifa1g08424 440 SMART mt_12 159 189 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 SMART mt_12 124 154 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 SMART mt_12 230 260 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 SMART mt_12 329 363 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Vifa1g08424 440 SMART mt_12 297 328 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g08424 mTERF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08424 - - pcin:129319850 548.125