Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08422 ATGAACTTAATCTGCTTATCTACCGTTGGATCTCGTGCTGGCTTTGTAGCTTGCCTCTTTATGCTATTCTCTTGCTCCACGTTGACTTCCACAGAAGCTTATGATCGGTTAGATCCAAATGGAAATATCACAATCAAATGGGATATCATGAGTTGGACTGCAGATGGTTATGTTGCAGTTGTTACAATGTACAACTTTCAACAATATCGCCGTATTCAAAAACCGGGATGGACATTAGGATGGACATGGGCTAAAAAGGAAATAATTTGGAACATGATAGGAAGCCAAACAACAGAACAAGGAGATTGTTCAAAATTCAAAGGAGAAATTCCACATTCTTGTAAGAAGGATCCAACAGTAGTTGATTTATTACCAGGAACACCTTACAACCAACAGGTTGCAAATTGTTGCAAAGGCGGTGTCTTGAGTTCATGGGCTCAAGATCCAGGCAAGGCTGTAAGTTCTTTTCAGCTTAGTGTTGGTTCTGCTGGAACAACTAATAGAACAGTTACACTTCCAAGAAATTTTACCCTCAGAGCACCTGGTCCTGGTTATACTTGTGGTCCTGCTAAAATTGTCAAACCAACTCAATTCATTACCAGTGACAAGAGGAGAGTCACACAAGCCTTGATGACATGGAATACTATCTGCACTTATTCTCATAGACTTCAACGGAGACTTAGTGACAAGGATTAG 696 0.4037 MNLICLSTVGSRAGFVACLFMLFSCSTLTSTEAYDRLDPNGNITIKWDIMSWTADGYVAVVTMYNFQQYRRIQKPGWTLGWTWAKKEIIWNMIGSQTTEQGDCSKFKGEIPHSCKKDPTVVDLLPGTPYNQQVANCCKGGVLSSWAQDPGKAVSSFQLSVGSAGTTNRTVTLPRNFTLRAPGPGYTCGPAKIVKPTQFITSDKRRVTQALMTWNTICTYSHRLQRRLSDKD 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08422 231 Pfam COBRA-like protein 57 220 IPR006918 GO:0010215|GO:0016020
Vifa1g08422 231 PANTHER PROTEIN COBRA 21 226 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08422 Vifa-Chr1 1318521242 1318522333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08422 15 226 COBRA Gene Family AT3G02210 73.585 1.57e-117 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08422 - - psat:127134172 430.254