Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08421 ATGGACTCAATCTGGTTATCTACCGTTGGATCTCGTGCTGGATTTGTAGCTTTACTGTTTATACTATTCTCTTGCTCAACGTTCACTTCCACAGAAGCTTATGATCCGTTAGATCCAAATGGAAATATTACACTCAAATGGGATATTATTAGTTGGACCGCTGATGGTTATGTTGCTGTTGTTACAATGTACAATTTTCAACAATATCGCCATATTCAAGAGCCAGGATGGACATTAGGGTGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGATGGGAAGCCAAACAACAGAACAAGGAGATTGTTCGAAATTCAAAGCAGGAATTCCACATTGTTGTAAGAAGGATCCAACTGTAGTTGATTTGTTACCAGGAACACCTTACAACCAACAGATTGCAAATTGTTGCAAAGGCGGTGTCTTGAATTCGTGGGCTCAGGATCCAGGCAACGCAGTAAGTTCTTTTCAGGTTAGCGTTGGTTCTGCTGGAACAACTAATAAAACAGTTAAGCTTCCAAGAAATTTCACCCTCAGAGCACCTGGTCCTGGTTATACTTGCGGTCCTGCTAAAATTGTCAAACCAACTCAGTTTATTACCAGTGACAAGAGGAGAGTCACACAAGCCTTGATGACATGGAATGTTACCTGCACTTATTCTCAGTTCTTGGCTCAAAAGACACCGACTTGTTGCGTTTCACTCTCATCCTTCTATAACGACACAATAGTAGACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACACAACCTGACAGTTGTGTAAATCGAAACTCTCCGCATTTATCTTCAGTTGTATCATCATCGGGAAAACCTTTAAATACACCTCTAGTCCAATGCACAAGTCACATGTGTCCGATTCGAGTGCATTGGCATGTGAAACTAAATTATAAAGAGTATTGGAGGATCAAGATCACAATCACAAATTTCAATTACAGAATGAACTACTCACAATGGAATCTTGTGGTGCAGCATCCCAATTTCGATAATCTTACTCAGCTTTTCAGCTTTAAGTACAAGTCCCTAAATCCCTACGAGGGCTTAAATGATACAGGTATGCTTTGGGGAGTGAAATTCTACAATGATTTTCTCTCATCAGCTGGATCATTAGATGCTTATCCTTGGTCACCAAATGCATCTTCAACACTAGTTTTCTCTTTACTTACTACACTCATAGCCACTTTAGCTTCTTTGTTAATCTTATCGAGTTTATCATAG 1239 0.4011 MDSIWLSTVGSRAGFVALLFILFSCSTFTSTEAYDPLDPNGNITLKWDIISWTADGYVAVVTMYNFQQYRHIQEPGWTLGWTWAKKEVIWNMMGSQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWAQDPGNAVSSFQVSVGSAGTTNKTVKLPRNFTLRAPGPGYTCGPAKIVKPTQFITSDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVDCPTCTCGCQNKTQPDSCVNRNSPHLSSVVSSSGKPLNTPLVQCTSHMCPIRVHWHVKLNYKEYWRIKITITNFNYRMNYSQWNLVVQHPNFDNLTQLFSFKYKSLNPYEGLNDTGMLWGVKFYNDFLSSAGSLDAYPWSPNASSTLVFSLLTTLIATLASLLILSSLS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08421 412 Pfam COBRA-like protein 57 220 IPR006918 GO:0010215|GO:0016020
Vifa1g08421 412 PIRSF COBRA 7 379 IPR006918 GO:0010215|GO:0016020
Vifa1g08421 412 PIRSF COBRA 376 411 IPR006918 GO:0010215|GO:0016020
Vifa1g08421 412 PANTHER PROTEIN COBRA 22 376 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08421 Vifa-Chr1 1318455608 1318458039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08421 15 408 COBRA Gene Family AT3G02210 65.977 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08421 - - gmx:100815779 707.597