Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08418 ATGGAGTCTTGGAATTTTGTTTCTCAAGATAAAGGTTTAATCTTGGGGTGGGATTTGAAAACCCCATCTAGTTTTTTAGGTCAACAAATCATTGAAAATGACAACAATCAAAGTTTTGAGGAATTGGGTTTTCATGGAATGTTGGGTAAACAATTGACTAATGTTGATGATGTTGCCACTAGTAGTTCTCTTGTTATGGCTGGACCAAATGCATTTTCACTTGGTGGATTTGGTGATCATGGAGATAAAATTGGTGCATCATTCTCCAAAGAGGCCGCATCGTCTGGATCGTTACCACCAACTAAGAGGGTGCGGTCTTTGGGAGTGAACTCGCAGATTGCTTACTGTCAAGTGTATGGATGTAATAAGGATCTGAGTGGTTGTAAAGATTATCACAAGAGGCATAAAGTTTGTGAGATTCATTCAAAGACTTCTAAGGTTATTGTTAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCAGGCCATAACGAGCGCAGAAGAAAGCCACAAGTTGGTATTCACTCTGGAAGAGCTGGCAGGTTGCTTCAACCGTATGGAGATAGCAGATTCCAAGGAAGCATGCTAACGTCGGCATCTTTTATATGCCAAGATATACTCCCCAGCGAGGTCTTTTCTTCCGAGAGATGTGGCACTAGTAACTGGTGGAGACCTATAAAAGCCGAAGACGGAACCGGAACTGGTTTTAGGCCTCTTTCTTCTATTCCAATGACCAATGCACATCCTCATTCAAGAACTCTATTTCCTTCGTATAGCGATAAACAATTTCCCTTTTTACATGAAAATGCTCCTACGTCTGCTACAGGAAGCATCTTCTGTGAAGACAATAGTCAATATCCTCCTATCCTCGAAGGCTCAAATTCCAGATCACAATCATTATTCCATGATACCTCCTTAGGAAGCGAAGACTTCAATGTTTTCGAAACTTCGGGAGTATCAGATGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCGTGCCGCGTCATCTGGTCATTCCGAGCAGCCATAACCATTATAACATGAGTCAGGTTTCCGATAAGATGATAGGAATGAGTTCACAAGCATCAAGTGGTGTGTCGGATAGGTTTCCATCTGAATTAAATCCGACAGACGGAAATCATCTCAGTCCTATACTGATATCAGACAATAATGAAATAGTCCATTTTGAAATGGCAGATCGGATTTTTCAAGGGTCCGATTTTGTCAATGTTAAAGGTCATCTTTCGAGTGAAGACGGCACAACCATTGACTTGCTTCAACTTTCGTCACAACTTCAGCGCGTTGAGCATCAGAGACGAGCCTTGCAGGTGAAGCAAGAAAATGGTTCTTCTTGCTCTCTCCGGATTACTTAA 1470 0.4197 MESWNFVSQDKGLILGWDLKTPSSFLGQQIIENDNNQSFEELGFHGMLGKQLTNVDDVATSSSLVMAGPNAFSLGGFGDHGDKIGASFSKEAASSGSLPPTKRVRSLGVNSQIAYCQVYGCNKDLSGCKDYHKRHKVCEIHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQPYGDSRFQGSMLTSASFICQDILPSEVFSSERCGTSNWWRPIKAEDGTGTGFRPLSSIPMTNAHPHSRTLFPSYSDKQFPFLHENAPTSATGSIFCEDNSQYPPILEGSNSRSQSLFHDTSLGSEDFNVFETSGVSDGGCALSLLSSQSQNSSSQSSGIPVPRHLVIPSSHNHYNMSQVSDKMIGMSSQASSGVSDRFPSELNPTDGNHLSPILISDNNEIVHFEMADRIFQGSDFVNVKGHLSSEDGTTIDLLQLSSQLQRVEHQRRALQVKQENGSSCSLRIT 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08418 489 Coils Coil 457 477 - -
Vifa1g08418 489 Gene3D - 108 177 IPR036893 GO:0003677|GO:0005634
Vifa1g08418 489 ProSiteProfiles Zinc finger SBP-type profile. 113 190 IPR004333 GO:0003677
Vifa1g08418 489 FunFam Squamosa promoter-binding-like protein 14 107 177 - -
Vifa1g08418 489 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 472 IPR044817 GO:0003677
Vifa1g08418 489 Pfam SBP domain 116 189 IPR004333 GO:0003677
Vifa1g08418 489 MobiDBLite consensus disorder prediction 350 364 - -
Vifa1g08418 489 MobiDBLite consensus disorder prediction 350 371 - -
Vifa1g08418 489 SUPERFAMILY SBT domain 114 194 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08418 Vifa-Chr1 1317843825 1317846482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08418 72 298 SBP-box Gene Family AT1G69170 41.909 3.92e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g08418 SBP 5.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08418 - - gmx:100777766 665.611