Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08417 ATGGGGAGAGGAAGGGTGCAATTGAAGAGAATTGAGAACAAGATCAATAGGCAAGTGACATTTTCAAAGAGAAGATGTGGTTTACTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAACAAAGGAAAACTCTATGAATATTCAAGCGACCCCTGTATGGAAAGAATTCTAGAACGATATGAAAGGTATTCATATGCGGAGAGGCAACTTGTTCCAAATGATCAGCCACAAAATGAAAATTGGATTATAGAACATGCAAAGTTGAAGGCAAGGTTGGAAGTCATACAGAAGAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCTTAAGTATGAAAGACCTTCAGAATTTGGAGCATCAGCTTGATTCAGCTCTCAAACAGATTAGATCAAGGAAGAACCAAGTTGTGTATGAATCCATTTCAGAGCTTCAAAAAAAGGATAAAGCCCTTCAAGAAAAAAACAACCTGCTCACAAAAAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAACTTGAGCTACAGAATGATGATATGGAACTAGCCTCTGCTGCACTTGTACCTCAATCATTGGAGACATTTAATATTGGATGCTCCCCTCAAGATAGAGGTGATGATGAAGGAAGCCAAGCTAGAGCTAATGCCCTTCTTCCACCATGGATGCTTCGTCCTATAAATGACTAG 714 0.395 MGRGRVQLKRIENKINRQVTFSKRRCGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMERILERYERYSYAERQLVPNDQPQNENWIIEHAKLKARLEVIQKNQRNFMGEELDGLSMKDLQNLEHQLDSALKQIRSRKNQVVYESISELQKKDKALQEKNNLLTKKIKEKEKALAQLELQNDDMELASAALVPQSLETFNIGCSPQDRGDDEGSQARANALLPPWMLRPIND 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08417 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g08417 237 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vifa1g08417 237 Coils Coil 122 145 - -
Vifa1g08417 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g08417 237 Coils Coil 151 192 - -
Vifa1g08417 237 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vifa1g08417 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g08417 237 Coils Coil 88 108 - -
Vifa1g08417 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08417 237 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Vifa1g08417 237 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08417 237 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vifa1g08417 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g08417 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g08417 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g08417 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vifa1g08417 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08417 Vifa-Chr1 1314574171 1314588389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08417 1 199 MADS-box Gene Family AT1G26310 63.682 1.10e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g08417 K-box 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08417 K09264 - gmx:100816836 366.696