Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08400 ATGCAAGTATTATTCAAGGTCAGGGGTTGTATGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTATTCAGCCGTTCAAGTTTTAGAGTTTAACTTACTCGGATTACCTATTCATTTGGGTAAGAAGGAGTGTCCCTATTACATGCGAACTGGATCTTGTAAGTTTGGAGCAACCTGCAAGTTTAATCATCCTGATCTGACATATGTTGTAGGATATGATTCCACTTCAGCATATGGGGGAGTAGACGCGACTGTGAATACAGGTCCAGCAATGACTGCTGGTCTTCCTCAAAATTCTGTTGGAGTGCTTCCAATTTCATCACCAGCAACTTCCATGGCACCAATCATACAAGTCGATTCTAGAAAGGTTCGCATGATATTACTCGACAATTTACCAAGAATCTGA 414 0.4058 MQVLFKVRGCMFGKDCKFDHTRGKYSAVQVLEFNLLGLPIHLGKKECPYYMRTGSCKFGATCKFNHPDLTYVVGYDSTSAYGGVDATVNTGPAMTAGLPQNSVGVLPISSPATSMAPIIQVDSRKVRMILLDNLPRI 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08400 137 Gene3D - 4 75 - -
Vifa1g08400 137 SMART c3hfinal6 4 22 IPR000571 GO:0046872
Vifa1g08400 137 SMART c3hfinal6 42 68 IPR000571 GO:0046872
Vifa1g08400 137 PANTHER PROTEIN PHOSPHATASE RELATED 6 102 - -
Vifa1g08400 137 SUPERFAMILY CCCH zinc finger 41 67 IPR036855 GO:0046872
Vifa1g08400 137 ProSiteProfiles Zinc finger C3H1-type profile. 42 69 IPR000571 GO:0046872
Vifa1g08400 137 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 67 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08400 Vifa-Chr1 1311679039 1311679660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08400 10 71 C3H Transcription Factor Family AT1G04990 38.710 1.32e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g08400 zf-CCCH 5.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08400 - - cave:132173508 122.864