Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08397 ATGCAAAGGAAAGGCTCAGAGGAGCATCAAGTGAAATTTAGAGAGAGCATAAGAAGGAAAAAAAACAGAAGAAACCAAATCAAGTCACAAGAAACAAGAGTTGATTCAATGCTGGTTCCCTATCCAAGTTGCAAGAACAGTCTTGTGTTTCCTTGCAGACCTGGCTATGGCCAACTTGGTACAAAGTGTCTCATCAAAGCCAACCATTTTCTTGTACATGTATCAGTCTCTGATTTAAGCCATTACAATGTTAAAATAACACCTGAAGTGAATTCTAGTAAAACAAGAAGGGCTGTCATATCTGAGCTTGTGAGGCTTCACAAGAACACTGAGTTAGCCAATAGGCTCCCTGTCTATGATGGAGGAATAAATCTTTACACTGCTGGTTTGCTTCCTTTTGTGTACAAGGAATTTACTGTAACATTGATTGAGGATGATTATGTAACCAGGGAAATCGAATTTAAGGTGGCAATCAAGTTTGCAACTAGTGTTAGCACGCATCAACTTAGGGAACTTCTAAGTGGGAAACAAGTGGAAACTCCACAAGAAGTACTTCGTGTTTTTGACATTGTGTTGAAGGAGGTTGCAGCTCAAAGTTACATACCAATTGGAAGATTTCTCTATTCTCCTGATGTGAGACAACCACAGAAACTTGGTGGCGGCATTGAATCATGGCGAGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGGTTGTCACTAAACATTGATATGTCATCAATGGCATTTATTGAACCAGTACCTGTAATTGACTTTGTTGCTCAAATTCTTGGAAAAGATGTGCACTCAAAACCACTGTCAGATGCAGATCGTGTCAAGATTAAAAAGGCCTTAAGAGGAGTAAAAGTAGACATCACACACAGAGGAAATTTCAGAAGGAAGTACCGAATATCAGGATTGACTTCACAACCAACAAGGGAGCTTATATTTCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATATACAATCAAATTTCCTCATTTGCCTTGCCTTCAAGTAGGAAGTCCGAGTAAAGTGAACTATATGCCCATGGAGGTATGCAAGATAGTTAGAGGCCAGAGATATACAAAAGGGTTGAACGAAAAGCAAATAACTTCACTTCTTAAGTTCTCATGCCAGAGACCCCGTGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACAATTATGAGAACAATCCCTTGGCAAAGGAGTTTGGCATCGGCATAGACAACACGCTTGCATCAGTGGAGGCTCGGGTTCTTCCTCCTCCATGGTTGAAATATAATGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTCGGACAATGGAATATGATGAACAAGAAAGTTATAAATGGAAGTAATGTAAGGTATTGGGCATGCATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCTCGCGGATTTTGCCAACAGTTAGTTCAGAAGTGTCGAATCTTAGGCATGGAATTTAGTCAAGAACCTGTGATTCCTGTATATTCAGCAAGACCAGATCAGGTCAAGAAGGCTTTGAAGTATGTACATACCGCTGCTCTAGACAAACTCGATGGTAAAGAGCTAGAGTTGTTGATTGCCATTCTTCCAGACATTAATGGCTCTTTGTATGGTGATCTCAAAAGAATCTGTGAAACAGATCTTGGGTTGATTTCACAATGCTGTCTTGCAAAATATGTTTTCAAGACTCACAGACAGTACCTGGCAAATGTGGCCCTAAAACTCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCATTAAGTTGGAAGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCGGATGTAACTCATGCAGAATCCGGAGACAATAATTTCCCATCCATTGCTGCAGTTGTAGCCTCTCAAGACTGGCCAGAAGTATCGAAGTATGCAGGGTTGGTTTGCGCCCAGCCTCATCGTGAAGAACTCATCAAAGATCTTTACAAATGTTGGAAAGATCCACAGAGGGGAGTGGTTTACGGTGGTATGATCAGGGAGCTTTTACTTTCATTTAAGAAGGCAACTGGACAAAAACCACTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAGGGACAGTTCTACCAAGTTTTGCTATATGAGCTTGACGCCATCCGTAAGGCTTGTGCATCTTTGGAATCAAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTCCCAAACAATCACGATGACAGAAACAGCACTGATACGAGTGGAAATATCTTACCTGGTACTGTGGTGGATTCAAAGATTTGTCATCCTACTGAATTTGATTTCTACTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCGGCACACTATCATGTCCTCTGGGATGAGAACAATTTCAGTGCAGATGAGATCCAGTCTCTAACTAACAACTTATGCTACACCTATGCAAGATGCACCCGGTCTGTTTCTGTAGTACCTCCAGCATACTATGCTCATTTGGCAGCCTACAGAGCTCGATGCTACATGGAACCCGATCATCCAGAGAATGCTAAACAGCGAGGTGCGAGATCAAAAGATAGAGCAGTTAGGCCACTTCCTGCATTGAAAGAGAATGTGAAAAATGTAATGTTTTACTGCTGA 2700 0.4085 MQRKGSEEHQVKFRESIRRKKNRRNQIKSQETRVDSMLVPYPSCKNSLVFPCRPGYGQLGTKCLIKANHFLVHVSVSDLSHYNVKITPEVNSSKTRRAVISELVRLHKNTELANRLPVYDGGINLYTAGLLPFVYKEFTVTLIEDDYVTREIEFKVAIKFATSVSTHQLRELLSGKQVETPQEVLRVFDIVLKEVAAQSYIPIGRFLYSPDVRQPQKLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPVPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVDITHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGYTIKFPHLPCLQVGSPSKVNYMPMEVCKIVRGQRYTKGLNEKQITSLLKFSCQRPREQETDILQTIQQNNYENNPLAKEFGIGIDNTLASVEARVLPPPWLKYNDTGREKEHLPQVGQWNMMNKKVINGSNVRYWACINFSRSVQESTARGFCQQLVQKCRILGMEFSQEPVIPVYSARPDQVKKALKYVHTAALDKLDGKELELLIAILPDINGSLYGDLKRICETDLGLISQCCLAKYVFKTHRQYLANVALKLNVKMGGRNTVLLDALSWKIPLVSDIPTIIFGADVTHAESGDNNFPSIAAVVASQDWPEVSKYAGLVCAQPHREELIKDLYKCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLESSYQPPVTFVVVQKRHHTRLFPNNHDDRNSTDTSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARCYMEPDHPENAKQRGARSKDRAVRPLPALKENVKNVMFYC 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08397 899 CDD PAZ_argonaute_like 253 367 - -
Vifa1g08397 899 Gene3D - 611 899 IPR036397 GO:0003676
Vifa1g08397 899 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g08397 899 Gene3D - 432 605 - -
Vifa1g08397 899 Pfam PAZ domain 258 384 IPR003100 GO:0005515
Vifa1g08397 899 FunFam Argonaute 10 432 605 - -
Vifa1g08397 899 SMART Piwi_a_2 542 863 IPR003165 GO:0003676
Vifa1g08397 899 FunFam Protein argonaute-2 247 373 - -
Vifa1g08397 899 Pfam N-terminal domain of argonaute 62 192 IPR032474 -
Vifa1g08397 899 SUPERFAMILY PAZ domain 249 408 IPR036085 GO:0005515
Vifa1g08397 899 SMART DUF1785_2 201 253 IPR014811 -
Vifa1g08397 899 FunFam protein argonaute 10-like 611 899 - -
Vifa1g08397 899 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 45 864 - -
Vifa1g08397 899 Pfam Argonaute linker 1 domain 202 251 IPR014811 -
Vifa1g08397 899 ProSiteProfiles Piwi domain profile. 542 863 IPR003165 GO:0003676
Vifa1g08397 899 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g08397 899 CDD Piwi_ago-like 412 862 IPR045246 -
Vifa1g08397 899 SMART PAZ_2_a_3 258 390 IPR003100 GO:0005515
Vifa1g08397 899 Pfam Argonaute linker 2 domain 396 440 IPR032472 -
Vifa1g08397 899 Pfam Piwi domain 543 862 IPR003165 GO:0003676
Vifa1g08397 899 Pfam Mid domain of argonaute 451 528 IPR032473 -
Vifa1g08397 899 ProSiteProfiles PAZ domain profile. 254 368 IPR003100 GO:0005515
Vifa1g08397 899 Gene3D paz domain 248 372 - -
Vifa1g08397 899 SUPERFAMILY Ribonuclease H-like 531 864 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08397 Vifa-Chr1 1311335706 1311348115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08397 45 899 Eukaryotic Initiation Factors Gene Family AT5G43810 71.132 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08397 K11593 - gmx:100813485 1514.98