Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08392 ATGCCTTATTCAAATAACATTCCAACATTTAAGATGCCACCACCGCAATTCTCATTATCCACCAGCAGCGATATCATTCAGGTGAGTCCTCAATTACCCATGACCAACCAACATACAGCATTGGATCGTTCCCATTCATTCAAAAGGCTAAGAATGTCTGACAACAACCATTCCAATACAGTGATGGGCCCTCCACCAAACAGACCAACAGGCAACATTTTCTTCAAGACCTGTATTTGTACTAGGTTTTGCTTTGGTACCTGTAGAAATGGTGAAAATTGTACCTTTGCTCATGGGGCTCATGAGATAAGGCAGCCACCACCAAACTGGCAGGAGCTCGTAGGTCTCCATACCCAGGAATGGCTGCAATTGGGAGGGAATTCGAATGATGATCAGAAAATCATTCACAAGATGAAGCTCTACAAGAGGTATTACAATGGTCAGGAATGTCCTTATGGTGATAACTATAACTTTCTTCATCAGGATCCTACTGAGTTTAGGGACGACTCTTGGAATACAAGAGAGTCCTCTGCCATCAGCTCTGCCATCAGCATTAGAACTTGTAATCATTTGGAAGGCAATAGGGTTGGGACTAAGCCAGTAAGGGGAACTAATTGGAATACTAAGATATGTCTCAAGTGGATCAATACCGGGTGTTGTACCTCAAAATTTGCCCTCTCTTTTCATCAATATTTTCTCACCACAAGACTCTTGGCACTGTTGACCCAAATTAGGGTTTGA 741 0.4265 MPYSNNIPTFKMPPPQFSLSTSSDIIQVSPQLPMTNQHTALDRSHSFKRLRMSDNNHSNTVMGPPPNRPTGNIFFKTCICTRFCFGTCRNGENCTFAHGAHEIRQPPPNWQELVGLHTQEWLQLGGNSNDDQKIIHKMKLYKRYYNGQECPYGDNYNFLHQDPTEFRDDSWNTRESSAISSAISIRTCNHLEGNRVGTKPVRGTNWNTKICLKWINTGCCTSKFALSFHQYFLTTRLLALLTQIRV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08392 246 ProSiteProfiles Zinc finger C3H1-type profile. 79 101 IPR000571 GO:0046872
Vifa1g08392 246 PANTHER CCCH ZINC FINGER/TIS11-RELATED 32 164 IPR045877 GO:0003729
Vifa1g08392 246 Gene3D - 74 172 - -
Vifa1g08392 246 SUPERFAMILY CCCH zinc finger 73 105 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08392 Vifa-Chr1 1310507861 1310508601 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g08392 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08392 - - psat:127073579 283.108