Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08385 ATGGATATAACTGAGATTTCAATCTTGCATCATGTTGGAATTGTTTTATTTTCTCTCTGGTTGCTATCTTCATTCGATTGTTGCCACGCTGCGTTTTATTTTCTCGCTTTGATCTATCTTTATCTCGTTCATGAACGTTATGTTACAAGGCTAACAAAGAGGTTGCAGTTTGAGGAGAGGAAACAATCTAATCAAAGAAGGGTGCTTTCTGATTCTGAAACAGTTAGGTGGTTGAACCATGCTGTTGAAAATATATGGCCTGTATGTATGGAACAGATTGTATCTCAGAAGATTTTGCTCCCTATCATACCTTGGTTCTTAGACAAATACAAGCCCTGGACTGCTAAAGAAGCTGTTGTTCAACACCTATATATGGGAAGAAACCCGCCTTTGATTACTGATATCAGGGTACTTCGCCAGAGTGATGATGACCACTTGGTTATGGAGTTAGGAATGAATTTTCTCACAGCGGATGATATGAGTGCAATACTTGCTGTGAAACTAAGAAAAAGATTGGGCTTTGGAATGTCAACAAAGCTGCATATAACGGGAATGCATGTTGAAGGGAAGGTCTTGGTGGGGGTAAAGTTTCTCAAGACATGGCCTTTTCTTGGCCGCTTGCGTGTATGCTTTGTCGAGCCTCCATATTTTCAGATGACTGTCAAACCTATTTTTACTCACGGGCTTGACGTGACAGAACTTCCAGGAATTGCTGGCTGGCTGGATAAGCTTCTGTCCATTGCTTTTGAACAGACCCTTGTTGAGCCTAATATGCTGGTTGTTGATGTTGAGAAATTTGTATCACCAGAGCAAGAGCCTTGGTTTAAAGTGGATGAGAAGGACCCGGTTGCTTATGCAAAAATAGAAATTGTTGAGGCAGCTGACATGAAGCCATCTGATTTAAATGGACTAGCTGATCCTTATGTGAAAGGTCATTTGGGTGGATATAGGTTCAGGACAAAGATACAAAGGAAAACACTTGCTCCCAAATGGCTAGAGGAATTTAGAATTCCCATCATAACATGGGATTCTAACAATGTGTTGGTTATTGAAGTTCGAGACAAGGACCGTTTCTATGATGATATCCTTGGGGACTGTTCTGTGAATATCAATGATTTTAGGGATGGACAAAAATATGATAAGTGGCTGCCACTAAAGAATGTTAAAATGGGGAGATTGCATTTACGAATAACAGTTTTGGAAGATAAGGAAAAGGAAGCTGATCCTACACACGACCAGGAACCAATAGACATTCAAGATAGAATAGATTCTTTTGTAAATGAGACCACCAAAAGAAGTTCTTTCTCGTCCTTTTCGTCTGACAAATCTCCAAAAGTAGCAGATGACTATGAGCCTATAGAAATTAAAGGGCAAAAGAAGACAGGAGTTTGGGTTCACCACCCAGGAAGTGAGGTTTCCCAAACCTGGGAGCCAAGAAAAGGGAAGGATCGACGCCTCGATACAGAGATTCACGGGGAACTTAATGATATATCTGGCAACTTTAATAATCCAACCGTATCTGGATCTTTGAACAATGACAGCAGCAGTCCTGATGATAATCCCGAAGATAAGCATCGAATGAGAACTGTTAGGAAAGGCCTACACAAAATTGGTTCTGTGTTTCGTAGGAGTCAGAAAAAGTATGAAAGATCAAGTTCAATTGCGGAGGATGTTCAATCTCCACATGATAACATTAGGTCAGTAAATGCCTCTAAAGGGGTCGGTGTGAAGTTTGTTATGGATGATAATATTACTGGCTTTCCGACCGGTAAGATTCAGGTAGAAGGTGGATCGACTGAAGGGAGTGGTTGCGGCCCTGAAAGCCCGGCAAAGAGAGATGTCAAGGACATGGCAAAGCATGTTTTAAAAAATGCAGAAAAATCGGCTCGTAGCTTAAAACACGTTCTTTCTGGTAAAGCAAGGAAGTCTAAAGGTGATTCAGTGGCAACCCTTCCAGAAAGAGAAAATGAATCTGACTCTTCTAATGATGAATTTCTTTCGCCACAAATAGATGTAATAAGAACTCCAGTTTATTCCCAGGCCATTGCTCCCAAAAGTGGTTCCCCCAAATCCAATTTGAGTGAGGTGTATAGTGTTCCATCCAACACCAAGCCTGAAAAGGCATGCTCCCCTGAAAGGTCTAATGAAGAATTTGTTAAGTCTGGTGAAAATGAGGAAATGGTGGCTGATAAAAGGGTTGTTAGCAGTGTTGCTGAAGTGAAGAATGTTTAA 2232 0.4095 MDITEISILHHVGIVLFSLWLLSSFDCCHAAFYFLALIYLYLVHERYVTRLTKRLQFEERKQSNQRRVLSDSETVRWLNHAVENIWPVCMEQIVSQKILLPIIPWFLDKYKPWTAKEAVVQHLYMGRNPPLITDIRVLRQSDDDHLVMELGMNFLTADDMSAILAVKLRKRLGFGMSTKLHITGMHVEGKVLVGVKFLKTWPFLGRLRVCFVEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPEQEPWFKVDEKDPVAYAKIEIVEAADMKPSDLNGLADPYVKGHLGGYRFRTKIQRKTLAPKWLEEFRIPIITWDSNNVLVIEVRDKDRFYDDILGDCSVNINDFRDGQKYDKWLPLKNVKMGRLHLRITVLEDKEKEADPTHDQEPIDIQDRIDSFVNETTKRSSFSSFSSDKSPKVADDYEPIEIKGQKKTGVWVHHPGSEVSQTWEPRKGKDRRLDTEIHGELNDISGNFNNPTVSGSLNNDSSSPDDNPEDKHRMRTVRKGLHKIGSVFRRSQKKYERSSSIAEDVQSPHDNIRSVNASKGVGVKFVMDDNITGFPTGKIQVEGGSTEGSGCGPESPAKRDVKDMAKHVLKNAEKSARSLKHVLSGKARKSKGDSVATLPERENESDSSNDEFLSPQIDVIRTPVYSQAIAPKSGSPKSNLSEVYSVPSNTKPEKACSPERSNEEFVKSGENEEMVADKRVVSSVAEVKNV 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08385 743 MobiDBLite consensus disorder prediction 709 723 - -
Vifa1g08385 743 Gene3D C2 domain 270 401 IPR035892 -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 646 661 - -
Vifa1g08385 743 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 1 694 - -
Vifa1g08385 743 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 71 264 IPR031468 GO:0008289
Vifa1g08385 743 MobiDBLite consensus disorder prediction 476 492 - -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 682 723 - -
Vifa1g08385 743 CDD C2 287 385 - -
Vifa1g08385 743 Pfam C2 domain 287 385 IPR000008 -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 682 708 - -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 495 516 - -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 630 668 - -
Vifa1g08385 743 CDD SMP_SF 94 262 - -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 589 612 - -
Vifa1g08385 743 SMART C2_3c 285 382 IPR000008 -
Vifa1g08385 743 MobiDBLite consensus disorder prediction 459 525 - -
Vifa1g08385 743 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 401 IPR035892 -
Vifa1g08385 743 ProSiteProfiles C2 domain profile. 269 383 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08385 Vifa-Chr1 1309002093 1309007188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08385 278 397 Lipid Metabolism Gene Families AT3G61300 32.000 4.36e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08385 - - gmx:100779958 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08385 1 1309002093 1309007188 Vifa1g08385 1 1309002093 1309007188 ECH