Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08378 ATGAAGATTCGGTCAGTGAAAATGAGGGAGGCTCACACTCAAAAGAACGGCCGCGTTTCCTTCTGCTCAGTCGTATGGGACCAGAAAGCCGAACACCTGGTCACCGCCTCCTCTTCCGACGCCTCTCTCTCCATTCACAACCCTCTTCTTCCCTCCGCCGCACCCAAGATCCTCCGTCACCACCGTGACGGCGTCACTGCTTTGGCTCTTAGCCCTAATTCTACCTGCCTTGCTTCTGGATCTGTCGACCATTCCGTTAAGCTCTACAAGTTTCCCGGTGGGGAGTTTGAGACAAATATTACAAGGTTCACACTTCCGATACGTTCTCTAGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGATGAGGGAATCAAGCTCATAAACACAGTTGATGGTTCAATTGCAAGGGTTCTCAAGGGGCACAAAGGACCTGTCACGGGTGTAGCTTTTGACCCCAATGGTGAATATTTAGCATCTCTGGATTCGAACGGTACTGTTATCATATGGGAACTCCACTCGGGGAGAAGTCTTCACAACCTCAAAGGCATAGCTCCTGATACTGGGCTAGATTTTTCAACTATGAATGTTCTTTGTTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCCGGGTTGAGAAATGATGTTGTCATGTATGATAGGGATACGGCTGAGAAGTTGTTCACTTTGAGAGGGGATCATAATCAGCCTATTTGTTTTTTGTGTTGGTCCCCTAATGGTAAGTATATGGCTACCTCTGGTTTAGATAAGCAGATTCTGATATGGGATGTTGATAGAAAGCAGGATATTGACAGACAGAAGTTTGATGAAAGAGTGTGTTGCATGCATTGGAAGCCGATTGGGAATGCATTGGCTGTTATTGATGTTAAGGGGAAGTATGGTTTGTGGGACAATGTTATACCTTCATCTATGAAGTCTCCAACTGAGGATATACCTTTGCAGGGAAAGAACAACAATGGGCTCCTTTTGTTTGATGAGGAGGATCAGGACAATAGTGTCAGTGGGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTTTGAGCCACCAACTAGTAGGAAAAGATTGCGCAAGCATTCCTTGAGTGAGGAAAACTTGGATGAGTATGAAGAAGAAGGAATTGATCTATATCCAAAGGTCGAATCTCACAAGAAAAAGAACCGATCCGTCAAGGAAAATTTGGATAATGGGAATGTAGTATTTACAAGCCCAATGGTAACATCTAAGACAAAAATGCAGGAGGCATTTCAATCAGGAGCCACTCCAGTGCAGCCCGGGAAAAAGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTCTCGATCACGATGGATATTCTCATATTGAGATTGATTTTCATGACACTGGGAGCAGTCCCCGAGTTCCATCAATGACTGACCATTTTGGATTCACAATGGCTGCATTGAATGAGAATGGAAGTGTCTTTGCAAATCCTTGCAAGGGGGAGAAAAACATGAGCACCCTCATGTATCGGCCATTTAGTACTTGGGCTAGTAATAGTGAGTGGTCCATGCGCCTTGAAGGTGAAGAAGTAAAGGCTGTTGCACTAGGTGCTTCTTGGGTGGCCGCAGTAACTAGTTTTAACTATCTTCGTATCTTTACCGAGGGTGGTATGCAGAGACATGTTATTTCGCTAGATGGGCCTGTGGTGACTGCATCAGGTTTCAAGGATAATCTGGCACTTGTCACTCATGCTTCTGATTGCCTTTCCTCAAATGATCAGGTGCTAGAGTTTAGGTTATTCAATATACCACAGGGGACCCAATCCCTTCGAGGTCGCTTACCAATAACTCCCGGTTCCTCTCTATGTTGGTTTGGATTTAGTGAAGAGGGTCAATTGTGTTCTTACGATTCCCAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGTTCCCAGTTTTCAGTGCCATTAAAGAGAAGAAGTCAGATGAAAACTATTGGATGGTTGGTTTGAATTCAAACAAGTTAGTTTGTGTTGTATGCAAAAAGCCTGAATCCTTCCCACAGGTGATGCCTAAGCCAATTCTCACTTTAAAGGATCTTTCATTTCCACTTGCTACCTCTGATTTGGGATCCGAGGCCCTTGAAAACGAGTTTATGATGAACAACATGCATCTCTTTGAGATTCAGAAAAAAATGGAAGAAATGGAAAATGCTGGTTTGGATGTTAGTTTACTTGATGATGACGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTAAGGCTTATAGCATCCTGCTGCAATAGTGATAAACTTGTGAGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAGAAATCAATGAAAGGGGCAATAAAACTTGTTACTACTCTTAAGCTTCCAAATTTGGCAGAAAAATTCAACAGCATATTGGAGGAAAGGCTACTTCGTGAAGATAAAAAGACTACAGAAACCAGCCTCAAGGAAAACAGTTCGGCTCCCATTACATCTGATTCTCTACCTAGTGGAAGCAAGACCTCAATGCCGACTGAAACATCAAAAGCACACACTGTTTTCTCATCAAAATTATCTGCCCCGTCGTTCATAAAGAAAAATAAAACACAAGACTCAATTACAGATGGAATGAGTAAAACTGCAATGGCGAATGAAAGTGCGAATGTAGAGCAGACAGGAGGAGGTGAAACAAGTGATAAGAAGGGTAAGGAGAAAATGCAAGCTCCTCAATCACATGGTACTTTTATAAAGTCAGATCCTAGTTTGGCGACAGCAAAAAGACCATCCAATCCATTTTTGAAGGCCTCAATCAAATGA 2847 0.431 MKIRSVKMREAHTQKNGRVSFCSVVWDQKAEHLVTASSSDASLSIHNPLLPSAAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGVAFDPNGEYLASLDSNGTVIIWELHSGRSLHNLKGIAPDTGLDFSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFTLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRQKFDERVCCMHWKPIGNALAVIDVKGKYGLWDNVIPSSMKSPTEDIPLQGKNNNGLLLFDEEDQDNSVSGSLSDLGENSNGEFEPPTSRKRLRKHSLSEENLDEYEEEGIDLYPKVESHKKKNRSVKENLDNGNVVFTSPMVTSKTKMQEAFQSGATPVQPGKKRFLCYNMLGSITTLDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSTWASNSEWSMRLEGEEVKAVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGPVVTASGFKDNLALVTHASDCLSSNDQVLEFRLFNIPQGTQSLRGRLPITPGSSLCWFGFSEEGQLCSYDSQGVLRLYTSQFGGSWFPVFSAIKEKKSDENYWMVGLNSNKLVCVVCKKPESFPQVMPKPILTLKDLSFPLATSDLGSEALENEFMMNNMHLFEIQKKMEEMENAGLDVSLLDDDAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTTLKLPNLAEKFNSILEERLLREDKKTTETSLKENSSAPITSDSLPSGSKTSMPTETSKAHTVFSSKLSAPSFIKKNKTQDSITDGMSKTAMANESANVEQTGGGETSDKKGKEKMQAPQSHGTFIKSDPSLATAKRPSNPFLKASIK 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08378 948 Gene3D - 198 353 IPR015943 GO:0005515
Vifa1g08378 948 SMART WD40_4 93 132 IPR001680 GO:0005515
Vifa1g08378 948 SMART WD40_4 226 266 IPR001680 GO:0005515
Vifa1g08378 948 SMART WD40_4 177 223 IPR001680 GO:0005515
Vifa1g08378 948 SMART WD40_4 135 174 IPR001680 GO:0005515
Vifa1g08378 948 SMART WD40_4 51 90 IPR001680 GO:0005515
Vifa1g08378 948 SMART WD40_4 269 307 IPR001680 GO:0005515
Vifa1g08378 948 SMART WD40_4 2 47 IPR001680 GO:0005515
Vifa1g08378 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vifa1g08378 948 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Vifa1g08378 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Vifa1g08378 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vifa1g08378 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Vifa1g08378 948 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 920 - -
Vifa1g08378 948 Pfam Minichromosome loss protein, Mcl1, middle region 426 708 IPR022100 -
Vifa1g08378 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Vifa1g08378 948 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Vifa1g08378 948 CDD WD40 22 310 - -
Vifa1g08378 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Vifa1g08378 948 MobiDBLite consensus disorder prediction 825 863 - -
Vifa1g08378 948 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Vifa1g08378 948 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Vifa1g08378 948 MobiDBLite consensus disorder prediction 340 358 - -
Vifa1g08378 948 Pfam WD domain, G-beta repeat 57 89 IPR001680 GO:0005515
Vifa1g08378 948 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Vifa1g08378 948 MobiDBLite consensus disorder prediction 340 370 - -
Vifa1g08378 948 Gene3D - 2 197 IPR015943 GO:0005515
Vifa1g08378 948 MobiDBLite consensus disorder prediction 832 863 - -
Vifa1g08378 948 MobiDBLite consensus disorder prediction 892 948 - -
Vifa1g08378 948 SUPERFAMILY WD40 repeat-like 18 307 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08378 Vifa-Chr1 1308051809 1308056447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08378 59 269 U-box Gene Family AT2G33340 21.963 1.19e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08378 K11274 - gmx:100818807 1426.77