Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08331 ATGAACCATATTCACTTTGGGAATGAAAGAGAGCAAATTCTAAAGAAGAGAAAATCATGTGATGAAGCCAATACCAACATGAAAAATTCAAAGAGAAGATTATGCAACAATAATAAAAATGAAGAAGAGAAAAACAACAACAACAACAACAAGGGATCAGTGTCCACAACACTGAAGCTTTACGACGATCCATGGAAGATAAAGAAGACACTAACCGACAGCGATCTAGGAATCTTGAGCAGACTCTTGTTGGCTGCAGATTTAGTAAAGAAACAAATCTTGCCTATGTTGGATGTTGATGAAGCAAGGGCTGCAGAAACTGAGGAAGGTTCCCCGGTTCATGTTTGCGACATGGAAACAAACACCATGCATGAACTCGTTCTAAAGCGATGGTCTTCCTCCAAGAGTTATGTTCTTATTGGAAAGTGGAATCAAGATTTCGTTAGAAGAAGAGAGCTTAAGAAAGGAGATGAGATTGGATTTCAATGGGATCCTTTTAAACGTACTTTCAATTTCTGTGTTCTTAAACGGGCCATGCCCATCTGA 546 0.3883 MNHIHFGNEREQILKKRKSCDEANTNMKNSKRRLCNNNKNEEEKNNNNNNKGSVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLDVDEARAAETEEGSPVHVCDMETNTMHELVLKRWSSSKSYVLIGKWNQDFVRRRELKKGDEIGFQWDPFKRTFNFCVLKRAMPI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08331 181 MobiDBLite consensus disorder prediction 19 55 - -
Vifa1g08331 181 Coils Coil 24 51 - -
Vifa1g08331 181 SUPERFAMILY DNA-binding pseudobarrel domain 63 177 IPR015300 -
Vifa1g08331 181 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 32 177 - -
Vifa1g08331 181 Gene3D - 64 178 IPR015300 -
Vifa1g08331 181 MobiDBLite consensus disorder prediction 19 46 - -
Vifa1g08331 181 CDD B3_DNA 65 176 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08331 Vifa-Chr1 1302115452 1302115997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08331 67 161 RAV Transcription Factor Family AT1G50680 30.392 2.72e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08331 - - pvu:PHAVU_009G204600g 244.588