Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08322 ATGGTGGGTGGTTGTAGAAGTAGAAGAAAGAGGAAGCAGTTAAGCAGAATCCATGCATTCTCAATTGGGAAGGCTTCATTCAAAGGTGAACATTCACTTATAGGAGGACCGGGTTTCTCAACAATAGTTTACTGCAAAGAACCAGAAAGTGGTAGTGACATTGTGAATTATGGTGACAATTATGTCAGAACTACTAAATATACAGCCTTCACTTTCATTCCTAAATCCTTGTTTGAGCAATTTAGAAGGGTTGCCAATTTTTACTTCCTTGTTTGTGCAATCTTGTCTTTTTTTCCTGTCTCTCCTTACTCAGCTCTTAGCAATGTTGTTCCTCTTGTCGTTGTCGTTGCTGTTACAATTGGGAAAGAGGCTGTTGAGGATTGGAGAAGATTTAAGCAGGACATTGAGATGAATAACAGAAAGGTTAAAATCCATAATGGAGAGGGTGTTTTCGACTACTCTAAATGGCGTGATTTGAAGGTTGGAGACATAGTGAAAGTAGAGAAAGATGAATTTTTCCCTGCTGATCTTATCCTACTATCATCAAGCTATGAAGATGCTATCTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTTAAACTCAAACAAGCACTGGAAGAAACTTCCAAGTTTCAAGAAGACTCTACATTCCAAAATTTCAAAGCTATTATCAAATGTGAGGATCCAAATGCATATCTTTACTCATTCATAGGCAATATAAAGCTTGAAGATCAACTATATCCGCTTGCACCTCAGCAGTTACTGCTTAGGGACTCAAAGCTTAGGAATACGGATTTTATATACGGTGCAGTAATCTTTACCGGCCATGATACGAAGGTTATGCAGAACTCCATGGACCCTCCTTCGAAGAGAAGCAAAGTTGAGAAGCAAATGGATAAGATAATCTACTTTCTGTTCTTAGTTTTGTTTTTTATTTCTTTTATCGGTTCAGTTTTCTTTGGCATTGCGACAAGTGAAGATCTTAAAAATGGAGTAATGAAGAGATGGTACCTAAGACCGGATGATACTACAATCTACTACGATCCAAAGAAAGCGCCGGTTGCAGCAATGCTGCATTTCTTGACAGCACTAATGTTGTATAGTTACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTACTTCAAAGCATGTTTGTCAACCACGATATACACATGTATTACGAGGAAACTAACCAGCCTGCACATGCTCGTACCTCGAATTTAAATGAAGAACTTGGCCAAGTTGATACTATTCTTTCGGATAAAACAGGAACTTTGACTTGCAATTACATGGAATTTGTCAAGTGTTCGATCGCTGGGATTGCATATGGACATGTGGAGAGACCTCTAGCAAGGAGAAAAGGATTGCCATTAAGTCAAGAGTTGACAGAAGATGGAAATATTACTGAGATTTCTGAAGCAAATCCATCCATTAAAGGTTTTAACTTCATGGATGAAAGGATTATGAATGGAAATTGGGTCAATGAACCTTACGCCAATGTAATCCAGAACTTCTTGCGCTTGTTGGCGGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAAATGGCAAAGTTTCATATGAAGCTGAATCACCTGATGAGGCAGCTTTTGTAATTGCAGCTAAAGAGCTTGGATTTGAGTTTAATGAAAGGACTCAAACAACTATTTCGCTGCGCGAGTTTGATTCGATATCAGGCAGGAACATTAGAAGGTCCTACAAACTTTTAAATATATTAGAGTTTAGTAGTTCAAGAAAACGAATGTCTGTTATAGTAAGAGATGAGGAAGAGAAACTACTGCTTCTTAGCAAAGGCGCTGACAGTGTCATGTTTGAACGACTTGCGAAAAATGGAAGGGAGTTTGAGAAAAAGACTAAGCAGCACATTAAGGAATATGCAGATGCTGGTTTGAGGACCTTGATATTGGCCTATCGCGAACTTGATGAAGAAGAGTACACTCTTTTTAATAAAGAATTGATGGAAGCCAAGAGCTTAGTAAGTGCAGACCGGGAGCAGATTGTGGAGGACGCATTGGAAAAGATTGAAAAGGATTTAATTCTTCTGGGTGCTACTGCAGTTGAAGACAAACTTCAAAACGGGGTTCCTGAATGTATTGACAAGCTAGCACAGGCAGGAATAAAGTTATGGATTTTGACTGGTGATAAAATGGAGACAGCAATCAATGTCGGGTTTGCTTGTAGTTTACTTCGGCAAGGAATGAAACAAATTATCATTAGTTCAGACACTCCAGAAACCAAATCACTTGAGAAAATGGAAAACAAGTCTGATGCTTATGTGGCAATTAAGAAAAGTGTTCTTTGTCAATTAATGGAAGGAAAGGAATTACTCGGTGTATCAATTGAAAACTCCGAGGCATTTTCTCTGATAATTGATGGGAAGTCTCTGACATATGCACTAGAAGATGATGTACAGGACTTGTTTCTCGCACTTGCAGTTGGTTGCGCATCTGTTATATGCTGTCGTTCTTCTCCGAAGCAAAAAGCACTTGTTACTAGATTAGTAAAGATTAAAACAGGTTGTACTACTCTTGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATTGGGATTGGTATAAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCTCAATTCCGTTATCTAGAGCGTTTACTTCTCGTGCATGGACATTGGTGTTACAGAAGAATCTCATTAATGATTTGTTACTTCTTTTACAAGAATATTGCCTTTGGCTTTACTCTTTTCTTGTATGAGATCTATGCTTCATTCTCCGGGCAAGTTGCATACAATGATTGGTTCCTGTCACTATATAATGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTATTTGACCAAGATGTCTCTGCTAGATTATGCCTTAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTTCTCTTTAGCTGGAAAAGGATTCTAGGCTGGACATTCAATGGAGTGATGAGTGCAACCATAATCTTTTTCTTTTGCATTAATGCAATTGAGAATCAAGCATTCCGAAAAGGAGGTGAAGTAGTTGGACTTGAAGTTCTTGGTGCAACCATGTACACTTGTGTTGTTTGTGTGGTAAATTTTCAAATGGCATTATCCATAACTTACTTCACTTACATACAACATATATTCATTTGGGGTGGCATTCTTTTTTGGTATATTTTCCTCTTAACATATGGAACTATTAACCCTTCTTTATCAACCACTGCTTATAAAGTCCTAATTGAAGCTTGTGCACCTGCACCATCTTATTGGCTCATCACTCTCCTTGTTCTCGTTGCTTCACTCCTTCCATATCTTGTATACGCTTCAATCCAAATGCGGTTCTTTCCTATCTATCATCAAATGATAAAGTGGATGTGCAGTGACGGACATGCAACTGGTCCAGAATATGTTGATATTGTACGACAGCGATCAATACAACATGCAACATTCGGGTTCACGGCTCGTTTCAAAGCATCCAAGACTTCTCATGTATGA 3561 0.3839 MVGGCRSRRKRKQLSRIHAFSIGKASFKGEHSLIGGPGFSTIVYCKEPESGSDIVNYGDNYVRTTKYTAFTFIPKSLFEQFRRVANFYFLVCAILSFFPVSPYSALSNVVPLVVVVAVTIGKEAVEDWRRFKQDIEMNNRKVKIHNGEGVFDYSKWRDLKVGDIVKVEKDEFFPADLILLSSSYEDAICYVETMNLDGETNLKLKQALEETSKFQEDSTFQNFKAIIKCEDPNAYLYSFIGNIKLEDQLYPLAPQQLLLRDSKLRNTDFIYGAVIFTGHDTKVMQNSMDPPSKRSKVEKQMDKIIYFLFLVLFFISFIGSVFFGIATSEDLKNGVMKRWYLRPDDTTIYYDPKKAPVAAMLHFLTALMLYSYLIPISLYVSIEIVKVLQSMFVNHDIHMYYEETNQPAHARTSNLNEELGQVDTILSDKTGTLTCNYMEFVKCSIAGIAYGHVERPLARRKGLPLSQELTEDGNITEISEANPSIKGFNFMDERIMNGNWVNEPYANVIQNFLRLLAVCHTAIPEVDEENGKVSYEAESPDEAAFVIAAKELGFEFNERTQTTISLREFDSISGRNIRRSYKLLNILEFSSSRKRMSVIVRDEEEKLLLLSKGADSVMFERLAKNGREFEKKTKQHIKEYADAGLRTLILAYRELDEEEYTLFNKELMEAKSLVSADREQIVEDALEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWILTGDKMETAINVGFACSLLRQGMKQIIISSDTPETKSLEKMENKSDAYVAIKKSVLCQLMEGKELLGVSIENSEAFSLIIDGKSLTYALEDDVQDLFLALAVGCASVICCRSSPKQKALVTRLVKIKTGCTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISLMICYFFYKNIAFGFTLFLYEIYASFSGQVAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARLCLKFPLLYQEGVQNVLFSWKRILGWTFNGVMSATIIFFFCINAIENQAFRKGGEVVGLEVLGATMYTCVVCVVNFQMALSITYFTYIQHIFIWGGILFWYIFLLTYGTINPSLSTTAYKVLIEACAPAPSYWLITLLVLVASLLPYLVYASIQMRFFPIYHQMIKWMCSDGHATGPEYVDIVRQRSIQHATFGFTARFKASKTSHV 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08322 1186 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 484 698 IPR023299 GO:0000166
Vifa1g08322 1186 NCBIfam HAD-IC family P-type ATPase 824 943 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g08322 1186 SFLD Haloacid Dehalogenase 408 911 - -
Vifa1g08322 1186 SUPERFAMILY HAD-like 421 915 IPR036412 -
Vifa1g08322 1186 SUPERFAMILY Calcium ATPase, transduction domain A 148 285 IPR008250 -
Vifa1g08322 1186 FunFam Phospholipid-transporting ATPase 538 696 - -
Vifa1g08322 1186 NCBIfam phospholipid-translocating P-type ATPase 57 1145 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa1g08322 1186 Pfam Cation transport ATPase (P-type) 519 622 - -
Vifa1g08322 1186 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1138 IPR023298 -
Vifa1g08322 1186 FunFam Phospholipid-transporting ATPase 696 900 - -
Vifa1g08322 1186 Pfam Phospholipid-translocating P-type ATPase C-terminal 888 1138 IPR032630 -
Vifa1g08322 1186 SFLD p-type atpase 408 911 IPR044492 -
Vifa1g08322 1186 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Vifa1g08322 1186 FunFam Phospholipid-transporting ATPase 118 288 - -
Vifa1g08322 1186 CDD P-type_ATPase_APLT_Dnf-like 59 1020 - -
Vifa1g08322 1186 Gene3D - 697 900 IPR023214 -
Vifa1g08322 1186 Gene3D - 116 288 - -
Vifa1g08322 1186 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1148 - -
Vifa1g08322 1186 Gene3D - 535 696 IPR023299 GO:0000166
Vifa1g08322 1186 Pfam Phospholipid-translocating ATPase N-terminal 43 107 IPR032631 -
Vifa1g08322 1186 PRINTS P-type cation-transporting ATPase superfamily signature 746 756 - -
Vifa1g08322 1186 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Vifa1g08322 1186 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08322 Vifa-Chr1 1300462877 1300467451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08322 3 1184 Primary Pumps ATPases AT1G68710 68.776 0.0 1738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08322 K01530 - gmx:100797039 1987.23