Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08320 ATGGAACCCATGGATATAGTTGCAAAATCAAAGGAAGATGCTTCGCTTCCTAAAGCGACGATGACAAAAATTATTAAAGAGATGTTACCACCAGATGTGCGTGTTGCAAGAGATACTCAGGATTTATTGATTGAATGCTGTGTAGAGTTCATAAACCTTATCTCATCAGAGTCAAATGAAGTATGTAACAGAGAGGAAAGAAGGACTATTGCACCTGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAAATGGAGACGGTGCAGGACTCTATAAAAGGTGCCAAGTGGAGCGGTGCAGCTGAGATGACAGAGGAACAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGGACCATAACTTCAAATCAACCTGATGCTGACCAAAGTTTAGAGAACTAA 471 0.4225 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVQDSIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTITSNQPDADQSLEN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08320 156 Coils Coil 115 135 - -
Vifa1g08320 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Vifa1g08320 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Vifa1g08320 156 FunFam Negative cofactor 2 beta 6 142 - -
Vifa1g08320 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Vifa1g08320 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08320 Vifa-Chr1 1300000248 1300002163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08320 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 79.221 1.26e-89 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa1g08320 CBFD_NFYB_HMF 2.5e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08320 K21751 - gmx:547635 283.493