Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08317 ATGGCTGCTGCGGTTGTTGCTGCTGACATTTCAACTGATGCCAACAAAATAGACTCAAAGCCAAAGGGTGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACAAAGCTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCATCTTATGGTGCTGGCAATGATCAGCGAGGTCAGGGGTTTAATATCTTCAGACCCAACAGTTTTCTGGCCAACAATAAGGTGGCACCTAATGATGATCATCAAAACAATCGAAGGAGAAGAAACAACTTTACTCAAGGGAGGAGAAGGTTGAATGGCAGATCTCTGAAGGCTCAGAGAGAAGACAGCGTTAGAAGAACAGTTTATGTTTCTGACATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAGGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGATTTGCTTTTGTCGAGTTTGCTGATGAGCATGGTGCTAGGGCAGCTTTAACCCTTGGTGGTACTGTGCTTGGATTCTATCCAGTGAGGGTCCTTCCTTCGAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATCGACAAAAAGATTTCTCAATCTGAAGTGAAGAACTTTTTTGAGTCATCCTGTGGCGAGGTCACTCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCGATAGCAGATAGTGCCATCCTTGCACTAAACTGTAGCGGCATGCCCTTGGGAACCCAGCCTATAAGGGTAAGTCCTTCCAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAGTATCGCGGTAA 900 0.4578 MAAAVVAADISTDANKIDSKPKGESEFSVQKLVDMFTKLNPLAKEFFPSSYGAGNDQRGQGFNIFRPNSFLANNKVAPNDDHQNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALTLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQSEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAIADSAILALNCSGMPLGTQPIRVSPSKTPVRPRVTRPVSR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08317 299 SUPERFAMILY RNA-binding domain, RBD 201 293 IPR035979 GO:0003676
Vifa1g08317 299 SUPERFAMILY RNA-binding domain, RBD 78 189 IPR035979 GO:0003676
Vifa1g08317 299 CDD RRM1_CID8_like 112 191 IPR034823 -
Vifa1g08317 299 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Vifa1g08317 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Vifa1g08317 299 SMART rrm1_1 115 185 IPR000504 GO:0003723
Vifa1g08317 299 SMART rrm1_1 212 283 IPR000504 GO:0003723
Vifa1g08317 299 MobiDBLite consensus disorder prediction 279 299 - -
Vifa1g08317 299 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 293 - -
Vifa1g08317 299 Gene3D - 72 190 IPR012677 -
Vifa1g08317 299 Gene3D - 199 293 IPR012677 -
Vifa1g08317 299 FunFam Polyadenylate-binding protein-interacting protein 11 79 191 - -
Vifa1g08317 299 MobiDBLite consensus disorder prediction 73 105 - -
Vifa1g08317 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Vifa1g08317 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 280 IPR000504 GO:0003723
Vifa1g08317 299 CDD RRM2_CID8_like 207 288 IPR034825 -
Vifa1g08317 299 FunFam Polyadenylate-binding protein-interacting protein 10 205 283 - -
Vifa1g08317 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08317 Vifa-Chr1 1299773685 1299777548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08317 111 268 Eukaryotic Initiation Factors Gene Family AT1G34140 24.224 7.30e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08317 - - gmx:100779109 458.373