Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08314 ATGGCGGAAGCAGACATCGACCACCACAACTCACCCGAGCACGAGGACCAAATCAATGACAGTAATACGAAAAAGAAGCACCGCAAGAGAAAAAGATCTCGTAAATTGGCACAGGAAGTTGAAAGAGAACAAGAGAATAACGAAACCGCGGAATCTGAAGAGGAGAAGGATGATGAACATCAACAAGAAGAAGAACACGGTGATGGCGTCGATGAAGAAGAGAATAAACCGGAGAACACCGTATCGTCTGGAATTATGAGCACCGAGACATTTTCTTCATTAGGTTTATCTCAACCTACTTCTAAGTCTATTACTGATATGACTTTCACCCGAATGACTCAGATTCAAGCGAAAGCTATTCCACCACTATTGATGGGAAAAGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGAAAAACACTTGCATTTTTAGTTCCAGCTGTCGAATTGTTGTACAACGTTCAGTTCACACCTCGTAATGGAACTGGTGTTGTTGTTATTTGTCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTCAAGTATCATTCGCAAACACTTGGATTGGTTATTGGGGGTTCCGCTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTTGCAACACCTGGCCGTCTTCTTGACCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGATGTGTCTCATTGTTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAAGAGATGAAGCAGATCATTAATATACTTCCAAAGAAAAGACAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACAGTGGAAGGATTGGAACAGGGCTATGTTGTTGTTCCCTGTGCCCAGCGTTTTGTTGCTCTATATACATTCTTGAGGAGATTTCAATTAAAAAAAGTGATGCATGCCCGAACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTCGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACTGCTCGTGGAGAAGGTGGAAAAGGAAATGCTCTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATTTGAAGGCAGCAAAGATTCCTGTGAAAGAGTATGACTTTAATGATAAAAAGCTTGCAAATGTACAATCGACACTGGAGAAGATGGTGGGCACCATTTATCATTTGAACACTATGGCTAAAGACGCATATAGGTCATATATATTAGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCAGTTTTACAAACCCACCGAAGATAAATCTGAACATAGATAGCAATGCTTCAAAGCATAGGAAGAAAATTCAAAAAGTGGAAGGAAGAAGACGTTGA 1569 0.4124 MAEADIDHHNSPEHEDQINDSNTKKKHRKRKRSRKLAQEVEREQENNETAESEEEKDDEHQQEEEHGDGVDEEENKPENTVSSGIMSTETFSSLGLSQPTSKSITDMTFTRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLVPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLMCLIVDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAQRFVALYTFLRRFQLKKVMHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKIPVKEYDFNDKKLANVQSTLEKMVGTIYHLNTMAKDAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFSFTNPPKINLNIDSNASKHRKKIQKVEGRRR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08314 522 SMART helicmild6 324 398 IPR001650 -
Vifa1g08314 522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Vifa1g08314 522 CDD DEADc_DDX18 100 297 IPR044773 GO:0003724|GO:0005524
Vifa1g08314 522 PANTHER RNA HELICASE 340 441 - -
Vifa1g08314 522 Gene3D - 10 299 IPR027417 -
Vifa1g08314 522 SMART ultradead3 108 313 IPR014001 -
Vifa1g08314 522 Pfam Domain of unknown function (DUF4217) 439 499 IPR025313 -
Vifa1g08314 522 CDD SF2_C_DEAD 295 408 - -
Vifa1g08314 522 Coils Coil 26 62 - -
Vifa1g08314 522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 437 IPR001650 -
Vifa1g08314 522 MobiDBLite consensus disorder prediction 1 85 - -
Vifa1g08314 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 434 IPR027417 -
Vifa1g08314 522 SMART DUF4217_3 438 501 IPR025313 -
Vifa1g08314 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 294 IPR027417 -
Vifa1g08314 522 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Vifa1g08314 522 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g08314 522 Gene3D - 338 435 IPR027417 -
Vifa1g08314 522 Pfam DEAD/DEAH box helicase 113 284 IPR011545 GO:0003676|GO:0005524
Vifa1g08314 522 Pfam Helicase conserved C-terminal domain 342 397 IPR001650 -
Vifa1g08314 522 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Vifa1g08314 522 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08314 Vifa-Chr1 1299102671 1299108876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08314 89 416 Eukaryotic Initiation Factors Gene Family AT3G13920 28.729 8.63e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08314 K13179 - gmx:100798290 792.341