Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08310 ATGGACGTTCGACGCGCCTCACGGGTCGTTATCGACCCCAAAGTAAGGCGTGTTGGTTTCTTTGCTCACCCCGAACCCGATTCCCCGCCACTTCCGGGCTCTCCCCAATCCGACCCGATATCCCCCGTCATTATCCCGCCTCCACGTCAGCTTACCGAACGAACTGCCGCCGTCCCCGTTCCCGAGTCCAAGTTCCGACGCCAGGAATTCGACGATCAGGTCCCGGTTGGGAGCTACAACCCCTCGCAATCGTTGCTTGCACCCTCGCCGACGGGTTCGATTTCTTCTAGCAGTGCCGGGTTCATTAACGGAGAGTTCTCCGAGGATCGCTCTGGTGTTGGGTGGTTTCGTGGCAGCGAGTTAAGTTTCCCTGGCGGAGGGTTTGATTTGCCGCGTGAAATTTTGGCGGAAAATATCTTTCCTGCTGTAACGGTGAATGTGAAGAATCTTCCAGGAGGCACTGAGAAGAGAGAAGAGGCTGTTAAAGAAGTATACCCTGATCCGCTGGCAGTTTCAAAGCCATTGAAAGAAAAAACTTCAAAGGCTGAGAGACGAGCTGTGCAGGAGGCACAAAGAGCTAAAAAAGCTGCTTCTAAAGCTAATGGAAGTTCCGCAGTTGCTGAATCTGGCAAAGCCGCCCTAACTAAAAGTAAAAAGCAGTCTTCACAAAAGAAAGATGGTCCTCCAGTTACATCGTCAGTCACTATTGATAACAAATCTGGGAATCGTCCTTTGGAGAAAGAGAGGAAAAAAGAGGCCCCTCATCAACAGTTGCAATATGATGATCAAAACAGAGTGGAAAAAGCTAAAAGGCGTGCACTGGTAAATCAAACTGAAGCAAGAAACAGAGTTGAATTATTTCGGCATTTGCCTCAATATGAACATGGAGCTCAGGTTCCTAATCTTGAGTCAAAGCTTTTCCATCTTGACTCCGTGCATCCTGCTGTGTTCAAGGTTGGATTACGTTATATGGCCGGAGATATATCAGGGGTTAATGCTCGTTGTATCGAAATGCTTAAAGCATTTCAGGAAGCTCTTATAGACTACTCCACTCCACCTGAAAAAGTACTTATTAGAGATTTAACTGCAAAAATCAGTAGTTATATTTCCTTTATTAGTGAATGCAGACCACTTTCTATTAGCATGGGAAATGCAATTAGGTTTGTGAAGAGTCGAATTGCCAGGTTGCCCTTAAGTCATACTGATGCTGAGGCAAAAGCAGCACTTTGTTCTGATATTGACCGATTTATTTATGAAAAAATAATTGTTGCGGAAAAGGTTATTATTGGACACGCCACTGCTAAAGTAAGGGACGGAGATGTTCTTCTTACATATGGACTGTCTGGTGTTGTTGAGATGATTCTCATATCTGCCCACGATCTTGGGAAACAATTCCGAGTTGTGGTGGTAGACTCACGGCCAAAGTTTGAAAGTCAGGCCTTACTTACTAGGCTTATGGCCAAGGGTCTGAGTTGTACGTATACTCATATAAATGCTGTTTCATATATTATGCATGAGGTCACAAAAGTTTTTCTGGGAGCTTCTGCTATTCTTTCTAATGGAACTGTACTTTCAAGGGTTGGGACATCATGTATTGCAATGGTGGGTCATGAATTTCGTGTTCCTGTATTATTCTGTTGTGAAACTTTTAAGTTTCATGAAAGGGTGCTACTTGATTCAATATGTTGCAACGAAATAGGTGACCCTGGTGCTGTTGCCACAGTTCCTGGAAGAATGGATATCAATTATCTGGACAATTGGGCAAATGAAAAGAATTTGCAGCTTTTGAATTTAATGTACGATGTTACTCCTTCAGATTATGTCTCAGTTATTGTTACGGAGCATGGAATGATTCCTCCTACAAGTGTGCCTGTGATCGTGCGCGAGTATGGACAAGAGCATTATTTGATATAG 1914 0.4431 MDVRRASRVVIDPKVRRVGFFAHPEPDSPPLPGSPQSDPISPVIIPPPRQLTERTAAVPVPESKFRRQEFDDQVPVGSYNPSQSLLAPSPTGSISSSSAGFINGEFSEDRSGVGWFRGSELSFPGGGFDLPREILAENIFPAVTVNVKNLPGGTEKREEAVKEVYPDPLAVSKPLKEKTSKAERRAVQEAQRAKKAASKANGSSAVAESGKAALTKSKKQSSQKKDGPPVTSSVTIDNKSGNRPLEKERKKEAPHQQLQYDDQNRVEKAKRRALVNQTEARNRVELFRHLPQYEHGAQVPNLESKLFHLDSVHPAVFKVGLRYMAGDISGVNARCIEMLKAFQEALIDYSTPPEKVLIRDLTAKISSYISFISECRPLSISMGNAIRFVKSRIARLPLSHTDAEAKAALCSDIDRFIYEKIIVAEKVIIGHATAKVRDGDVLLTYGLSGVVEMILISAHDLGKQFRVVVVDSRPKFESQALLTRLMAKGLSCTYTHINAVSYIMHEVTKVFLGASAILSNGTVLSRVGTSCIAMVGHEFRVPVLFCCETFKFHERVLLDSICCNEIGDPGAVATVPGRMDINYLDNWANEKNLQLLNLMYDVTPSDYVSVIVTEHGMIPPTSVPVIVREYGQEHYLI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08310 637 Gene3D - 423 630 IPR042529 -
Vifa1g08310 637 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 37 634 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 25 46 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 224 240 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 241 269 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 149 269 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 202 217 - -
Vifa1g08310 637 SUPERFAMILY NagB/RpiA/CoA transferase-like 325 630 IPR037171 -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 75 98 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 20 98 - -
Vifa1g08310 637 MobiDBLite consensus disorder prediction 174 192 - -
Vifa1g08310 637 Pfam Initiation factor 2 subunit family 328 620 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08310 Vifa-Chr1 1297758240 1297764010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08310 1 637 Eukaryotic Initiation Factors Gene Family AT5G38640 55.639 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08310 K03680 - gmx:100778711 825.854