Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08300 ATGGATGGAAACAAAGACGATGCATTGAAATCCTTCAGAATCGGTAAACAAGCCTTGCAAAACGGCGATCGGAATCGCGCTTTGAAGTTTCTTAACAAAGCTCGCCGCCTCGATCCCGCCCTTCCCGTTGACGATCTCTTGTCCACCATAGACAAAGATGAAGGGGATCATCCTCCAGTAGCTGCCGACACGCCTCCCTCCGATCAACCTTCGATACGTCGAAGATCTTCCGCTCCGGCGCCGGGGCCTTCCTCGTCTTCCTCAATATCATATAGTCAGGAACAAATTTCAATTATAAGAGAAATTAAGAGGAAGAAGAATTATTACGATATTTTAGGGTTGGAGAAGAGTTGCACTGTGGATGATGTCAGAAAATCTTATAGGAAGCTCTCTTTGAAGGTTCATCCTGACAAGAACAAGGCCCCTGGAGCGGAGGACGCATTTAAGTTGGTGTCCAAGGCTTTTCAGTGTCTTGGTAATGAGGAGAGTAAGAGAAAGTATGATGTTTCTGGAGAAGATGAAGTGGTTTATGAAAGGCGCGCTGCCGCCAGACCCGCTCATGCTAGAGGTTTTAATGGTTACTATGATGCTGATGTTGACGCCGAGGAAATATTTAGAAATTTCTTCTTTGGAGGAATGGCCCCTGCTGCTAATTTCGGTGGCTTTAGTTTTGGAGGACCCGGGATGGCTCATAGACAGCCTGCTGCTGATAATGGGTCCGGCGGATTCAATATCCGTGCTTTGATTCAGGTGCTTCCTGTACTTCTCATTTTGCTTATTAACTTTTTGCCTTCGTCAGATCCTATCTACACTCTTTCGCAAAACTATCCCTATGAACACCGGCTTACTACACCTAAGGGTGTTAACTACTATGTTAAGTCCACAAAGTTTGAACAAGATTATCCCTTGGATACCCGCGAACGTCTTACAATTGAGGAAAGAGTTGAGAGAGAATACTTTGGTATTCTTCGCCAGAATTGTCAGTTTGAGATGCAGCGTCGCCAGTGGGGATATATCAGGGAAACACCTCACTGTGATATGCTTAGGAAGTTTGATTCAGTCCGTTGA 1068 0.4541 MDGNKDDALKSFRIGKQALQNGDRNRALKFLNKARRLDPALPVDDLLSTIDKDEGDHPPVAADTPPSDQPSIRRRSSAPAPGPSSSSSISYSQEQISIIREIKRKKNYYDILGLEKSCTVDDVRKSYRKLSLKVHPDKNKAPGAEDAFKLVSKAFQCLGNEESKRKYDVSGEDEVVYERRAAARPAHARGFNGYYDADVDAEEIFRNFFFGGMAPAANFGGFSFGGPGMAHRQPAADNGSGGFNIRALIQVLPVLLILLINFLPSSDPIYTLSQNYPYEHRLTTPKGVNYYVKSTKFEQDYPLDTRERLTIEERVEREYFGILRQNCQFEMQRRQWGYIRETPHCDMLRKFDSVR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08300 355 Gene3D DnaJ domain 103 219 IPR036869 -
Vifa1g08300 355 Pfam DnaJ domain 107 168 IPR001623 -
Vifa1g08300 355 PRINTS DnaJ domain signature 127 142 IPR001623 -
Vifa1g08300 355 PRINTS DnaJ domain signature 109 127 IPR001623 -
Vifa1g08300 355 PRINTS DnaJ domain signature 143 163 IPR001623 -
Vifa1g08300 355 PANTHER AT29763P-RELATED 1 350 - -
Vifa1g08300 355 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Vifa1g08300 355 SUPERFAMILY Chaperone J-domain 103 224 IPR036869 -
Vifa1g08300 355 MobiDBLite consensus disorder prediction 47 91 - -
Vifa1g08300 355 Pfam Domain of unknown function (DUF1977) 264 335 IPR015399 -
Vifa1g08300 355 CDD DnaJ 107 160 IPR001623 -
Vifa1g08300 355 FunFam Chaperone protein dnaJ 49 103 220 - -
Vifa1g08300 355 ProSiteProfiles dnaJ domain profile. 107 171 IPR001623 -
Vifa1g08300 355 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Vifa1g08300 355 SMART dnaj_3 106 163 IPR001623 -
Vifa1g08300 355 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08300 Vifa-Chr1 1296686605 1296687672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08300 102 179 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.366 2.79e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08300 K09518 - gmx:100793797 505.368