Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08279 ATGCGACCCCAACAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTTGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTCACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGTGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGACATTCAGCTGGTCATCGACGCACGAACCTATGTTCCTCGGAACAGAAATATCGACGAGAAGAATCAGCTTCTTTTGGGAATTCGTCGAGCCAATAGACCACAAACTGTAATGCCATCATCAGTTTTGTCCAGCGACAGTATGCACATTGGACTTCTGGCAGCCGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCGTCTGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGCTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGGATAAGTGATCTGGATGCGGTTCGGTGGCCGAGTTCTCATTGGCGTTCTGTTAAGGTCGGTTGGGATGAATCAACAGCAGGAGAGAGACAGACACGGGTTTCATTATGGGAAATCGAGCCTTTAACAACATTCCCAATGTATCCATCATTGTTTCCCCTCAGATTGAAACGACCGTGGCATCCTGGCACCTCTTCTTTGCTTGATGGAAGAGATGATGTGGCAAATGGTGCTGGTGGCATGTTACCATGGATGCAGCAGAGACTAGATCCAACTTTACTCGGAAACGATCATAATCAACAATATCAAGCCATGTTGGCGGCAGCTGGAATGCAGAATATGGGTAGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAACAGCCTATCCAGTACCTTCAGTCTGGAAACAATAATTCGCCTTTGCAACTTCAGCAACCACACGCAATTCCACAATCAGTGTCCTCTAATATGATGCAACCACAAGGCCAAGTGCTTACTGAAAACCTGTCTCAGCACCTCCTTCAGAAAACAAATAACAATCAAGAAGTCCAAGGTCAACAGCAGCAACATGGTTATCAAGATACACTTCTTATTCAAAATGATCAACTCCATCAGCGACAACAACAACAGTCCAATGCGCCATCACCATCGTATACAAAACAAGATTTCCTGGATTCAAACTTGAAGTTTCCTGCTTCGGCTTCCTCCGGACAAAACATGCTTGGTTCGCTTTGCAATGAAGGAACTGGCAATCTCTTGAATCTATCAAGTCTATCCAGAAGCGGTCAGTCGTTGATGACCGAACAGTTACCCCAACAATCATGGACTCAGAAGTATGGGAATATGCAGGTCAACGCGTTTAGCAACACAATGTCTCATGCACAATTTTCTGGAAAAGATTTGGCAGTGGTGCCACATTGTGATTCAGATACGCAAAACCATACTCTCTCGGGTGTCAATATTGATTCATCTGGCCTTCTACTCCCCACCACTGTCCAAGGTTACACCACTTCGTCTGCTGACACTGGTGCGTCAACGATGCAGTTAGGGGAGTCGGGATTTCAGAGTTCTCTATACGCCTGCATGCAAGATTCATCTTCATTTTTGCAAAATGCAGAGCAAAGCGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGTTCGGTTGGTCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTAATTTGTAAAAATGTATATACAGGTAGAAGAGTCAGAAGTTGGTGA 2343 0.4392 MRPQQGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGLSDEQILETFKKHPFCMLVSPRKINAIMDFWVHHLGLDSLDLARAPGILQCSLEKWIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNDIQLVIDARTYVPRNRNIDEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPSSHWRSVKVGWDESTAGERQTRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDDVANGAGGMLPWMQQRLDPTLLGNDHNQQYQAMLAAAGMQNMGSGYLMRPQMMNFQQQPIQYLQSGNNNSPLQLQQPHAIPQSVSSNMMQPQGQVLTENLSQHLLQKTNNNQEVQGQQQQHGYQDTLLIQNDQLHQRQQQQSNAPSPSYTKQDFLDSNLKFPASASSGQNMLGSLCNEGTGNLLNLSSLSRSGQSLMTEQLPQQSWTQKYGNMQVNAFSNTMSHAQFSGKDLAVVPHCDSDTQNHTLSGVNIDSSGLLLPTTVQGYTTSSADTGASTMQLGESGFQSSLYACMQDSSSFLQNAEQSDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMLICKNVYTGRRVRSW 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08279 780 SMART mt_12 47 75 IPR003690 GO:0003690|GO:0006355
Vifa1g08279 780 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Vifa1g08279 780 SMART mt_12 146 180 IPR003690 GO:0003690|GO:0006355
Vifa1g08279 780 Pfam mTERF 30 182 IPR003690 GO:0003690|GO:0006355
Vifa1g08279 780 Gene3D - 321 393 - -
Vifa1g08279 780 Gene3D - 728 780 - -
Vifa1g08279 780 ProSiteProfiles PB1 domain profile. 732 780 IPR000270 GO:0005515
Vifa1g08279 780 MobiDBLite consensus disorder prediction 553 573 - -
Vifa1g08279 780 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 245 769 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g08279 780 FunFam Auxin response factor 321 393 - -
Vifa1g08279 780 Gene3D Transcription termination factor 3, mitochondrial 6 210 IPR038538 -
Vifa1g08279 780 FunFam Mitochondrial transcription termination factor-like 4 209 - -
Vifa1g08279 780 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08279 Vifa-Chr1 1292961129 1292965368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08279 246 771 B3 DNA Binding Superfamily AT5G37020 58.303 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g08279 mTERF 8.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08279 - - gmx:100784373 793.112