Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08271 ATGGCTCCTCCATGGATTCAAGAACTCCATCTCAATTCCTTGACTATACCAGTCACGATCATCAACAAATTCTCCGTTACTCCTTCCAAGCCTATTCCTGTTAAACCAGGCGATAGTTTATACCTTTCAAACCTCGATGACATGATCGGGGCGCGCGTCTTCACACCAACCGTGTATTTTTATCAATCAGACACCTCCGGCGGGACTTTCCAAAAACCAGTCACAGAAATACTTCGACGTTCGCTAGCCGATGTTTTGGTTCCTTACTACCCTCTCTCTGGAAGGTTGAGAGAAACAAAAAATGGTAAACTGGAAGTGTTTTTCGGACAAGAACTAGAAGGAGCTTTAATGGTTGAAGCAAGAACTAACATAGCTTTATCTGAACTAGGTGATTTTGCAGCACCAAACCCTTGTTGGGAACCATTGATATTCAAATTTCCGAATGAAGAACAATACAAAGTGTTAGAAATGCCACTTGTTATAGCTCAGGTAACACTCTTCACATGCGGTGGATTTAGCCTCGGTTTACGCCTTTGTCATTGTATATGTGATGGAATGGGAGCTATGCAATTTCTAGGAGCATGGGCTGCAACAGCAAAAGCAGGAACATTGGTGACAGAACCTGAACCATGTTGGAATAGAGAAGTTTTCAAGCCACGTGATCCACCAGAAGTGAAGTTTCCACACATGGAGTTCATGAGAATTGATGAAAGATCAAATTTAACAATGAAACTATGGAAAACAAAGCCAGTTCAAAAATGTTATAGAATCAACCGCGAGTTTCAAAACCAATTGAAATCACTTGCTCAACCATTTGATGATGCTGGTTGCACTACATTTGATGCAATGGCTGCACATATTTGGAGATCATGGGTTAAAGCTCTTGATGTGAAGCCTTTAGATTACCAATTGAGGCTAACGTTTTCTGTGAATGCTAGACAGAAGCTTAAAAATCCAGCATTGAAAGAAGGTTTTTATGGTAATGTGGTTTGTATTGCTTGCACAACAAGTAATGTTTCTGAGCTTGTGAATGGGAAATTACCAGAGACTACCCTTTGGGTTCGCGAAGCTAGACAGAATGTAACAGAAGAATATTTGAGATCAACAGTTGATTATGTTGAAGTTGATAGGCCAAAGCAACTCGAGTTTGGTGGTAAGCTTACAATAACTCAATGGACAAGATTTTCGATATATACATGTGCTGATTTTGGATGGGGTAAGCCAATTTATGCTGGTCCTATAGATTTAACACCTACACCTCAAGTTTGTGTGTTTTTACCTGAAGGGGAAGGTGATTGTAGTAATGGTTCTATGATTGTTTGCATTTGCTTGCCTGAATCTGCTGCTAACAAGTTTACACAAGCCTTGTTGATCGATTCTCTTTCGACATAG 1392 0.4023 MAPPWIQELHLNSLTIPVTIINKFSVTPSKPIPVKPGDSLYLSNLDDMIGARVFTPTVYFYQSDTSGGTFQKPVTEILRRSLADVLVPYYPLSGRLRETKNGKLEVFFGQELEGALMVEARTNIALSELGDFAAPNPCWEPLIFKFPNEEQYKVLEMPLVIAQVTLFTCGGFSLGLRLCHCICDGMGAMQFLGAWAATAKAGTLVTEPEPCWNREVFKPRDPPEVKFPHMEFMRIDERSNLTMKLWKTKPVQKCYRINREFQNQLKSLAQPFDDAGCTTFDAMAAHIWRSWVKALDVKPLDYQLRLTFSVNARQKLKNPALKEGFYGNVVCIACTTSNVSELVNGKLPETTLWVREARQNVTEEYLRSTVDYVEVDRPKQLEFGGKLTITQWTRFSIYTCADFGWGKPIYAGPIDLTPTPQVCVFLPEGEGDCSNGSMIVCICLPESAANKFTQALLIDSLST 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08271 463 Gene3D - 236 456 IPR023213 -
Vifa1g08271 463 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 26 452 - -
Vifa1g08271 463 Gene3D - 15 234 IPR023213 -
Vifa1g08271 463 Pfam Transferase family 17 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08271 Vifa-Chr1 1292391790 1292393181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08271 21 457 Monolignol Biosynthesis Gene Families AT5G48930 30.580 1.81e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08271 K15400 - gmx:100802814 810.446