Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08263 ATGGATATAGATTTAGTTTCTTCCCCTTCCAAGACAAAAGACATCGACGGCCTCCTCGCCGATGTCGGATACAAAGTTCGGTCTTCTGAGCTACATCAAGTGGCTCATAATATCGAACGGTTGGAGAACGCAATCGTGAATTCTTCCAGCGACATTTCTCAATTCGCTTCTGATACTGTCCACTACGATCCCTCCGACATTGGCAATTGGGTGGACAATCTCCTCTCAGAATTCGACCACACAGCCTCTTTACCCTATGATTTTTCAGAACTTCCAGATCTCGCAGCGCCGCTTCCGCTCCCACTGCCACAAGATCAACACTACCTCCACCAGCTAAAGGTGGTAACCACCGTTGAAGAAGACTCGGCGATAAAGCTAGTCCATATGCTGATGACGTGTGCGGACTCCTTGCAACGTGGCAACTTACCATTGGCAGGCTCGTTAATCGAAGGCATGCAAGGGTTGTTAGCAGACATGAACACCAATTGCGGCATTGGAAAAGTCGCCGGGTACTTCATTGATGCTTTGAACCGCCGTATCTTCGGCATAAACAATGTAATCCATGTTTCTCCTCATGAGAACGATATCCTTTACCATCACTACTACGAAGCTTGTCCCTACCTCAAATTCGCTCACTTCACAGCTAATCAAGCTATACTCGAAGCTTTCAACGGCCACAATTGTGTTCACGTCGTTGATTTCAACCTCATGCATGGTCTTCAATGGCCGGCGCTGATTCAAGCTCTTGCTCTTCGTCCTGGAGGACCACCTTTTCTGCGGCTAACCGGCATTGGTCCGCCCTCGCCGGATGAGCGTGATAATCTCCGTGAAATCGGGCTGCGTCTCGCTGAGCTGGCTAGATCGGTAAATGTTAGATTCGCGTTTCGTGGAGTAGCGGCTTGGCGGCTTGAGGATGTGAAGCCGTGGATGCTTCAGGTGAGTTCTAAGGAAGTTGTGGCGGTTAATTCTATCATGCAACTTCATCGCCTTCTCGGATCTGAATCTGATCCGGTTTCTTCTGGTATTGAAATGGTTTTGGGTTGGATCCGGAGTTTGAACCCGAAAATCATGACGGTTGTGGAGCAGGAAGCGAACCATAACGAGGATGGGTTTATGGAGCGGTTCACGGAGGCACTACATTATTACTCGACCGTTTTTGATTCGCTTGAAGCGTGTTCTGTTGAACCGGACAAGGCTATGGCTGAGATGTTTCTGCAGAGGGAGATATGCAACGTCGTGTGCTGCGAGGGTTCGGCTCGGGTTGAGAGACATGAACCGCTTGTTAAGTGGAGGGAGAGGCTTGGTAAAGCCGGGTTCAGACCGCTGCATTTGGGTTCGAACGCGTTTAAGCAAGCAAGTATGCTGTTGACTCTGTTTTCTGCGGAGGGTTATTGCGTGGAAGAGAACCAAGGGAGCTTGACTTTGGGTTGGCATAGCCGCCCTCTCATTGCGGCTTCGGCTTGGCAAGCTGTGCCTTTGACAGACGCTGAAACACTGCGTTTCGATCATTGA 1512 0.498 MDIDLVSSPSKTKDIDGLLADVGYKVRSSELHQVAHNIERLENAIVNSSSDISQFASDTVHYDPSDIGNWVDNLLSEFDHTASLPYDFSELPDLAAPLPLPLPQDQHYLHQLKVVTTVEEDSAIKLVHMLMTCADSLQRGNLPLAGSLIEGMQGLLADMNTNCGIGKVAGYFIDALNRRIFGINNVIHVSPHENDILYHHYYEACPYLKFAHFTANQAILEAFNGHNCVHVVDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSPDERDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEVVAVNSIMQLHRLLGSESDPVSSGIEMVLGWIRSLNPKIMTVVEQEANHNEDGFMERFTEALHYYSTVFDSLEACSVEPDKAMAEMFLQREICNVVCCEGSARVERHEPLVKWRERLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQAVPLTDAETLRFDH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08263 503 Gene3D - 14 78 IPR038088 -
Vifa1g08263 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 107 485 IPR005202 -
Vifa1g08263 503 ProSiteProfiles GRAS family profile. 117 489 IPR005202 -
Vifa1g08263 503 Pfam GRAS domain family 126 489 IPR005202 -
Vifa1g08263 503 SMART DELLA_2 16 88 - -
Vifa1g08263 503 Pfam Transcriptional regulator DELLA protein N terminal 16 82 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08263 Vifa-Chr1 1291012335 1291013846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08263 15 489 GRAS Transcription Factor Family AT1G14920 47.843 1.06e-155 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g08263 GRAS 3e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08263 K14494 - gmx:100805968 768.074