Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08262 ATGCACGTGCAACTCAAGAGGGCAAGGAGAAGGACAAATACACAAGATATAAAGTTAGCAATGGATATGATGGTTGTGTTCTCTGACGAAGATGATCGTAATGCCTACAGTGCTATTGTCGAAAGGCTTGCGAAAAAGTTGGAACTTCACAGTGTTAAGGATCTTGAGGTAGAAACAGTGGCTATTGGATACCTTGCTAGAGAAAGAAAGGGACACCTAGAAGAGAGAACACATAAAATAATTGGTCTTCTCAACCAATACAAAAGGATTGCATGTATGGAAGAAATTGGGGTTGTTATAGATGATGATCCTGCCATGCCTAATAAGATGTTTGGAAGAAGCACTTCTTTGAACATCCCTTATGAGTTTCTATGTCCAATAACACTTGAAATCATGACATGTCCTGTTATTGTTGGAATTGAACAGGGAAAGCATATAGAAGTGGTTCAAATCCAATCACAACTCTTTCCCAAAGACAAGGCAACCACTTGA 492 0.3923 MHVQLKRARRRTNTQDIKLAMDMMVVFSDEDDRNAYSAIVERLAKKLELHSVKDLEVETVAIGYLARERKGHLEERTHKIIGLLNQYKRIACMEEIGVVIDDDPAMPNKMFGRSTSLNIPYEFLCPITLEIMTCPVIVGIEQGKHIEVVQIQSQLFPKDKATT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08262 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 161 IPR013083 -
Vifa1g08262 163 Pfam U-box domain 119 139 IPR003613 GO:0004842|GO:0016567
Vifa1g08262 163 SUPERFAMILY RING/U-box 115 139 - -
Vifa1g08262 163 ProSiteProfiles U-box domain profile. 118 163 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08262 Vifa-Chr1 1290935886 1290936490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08262 4 150 U-box Gene Family AT5G42340 52.703 2.60e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08262 - - psat:127127055 225.713