Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08260 ATGGGTTCATTCCAAACCTTCAACTTTGAAACTCAAATTCCCACAGAGCTTTTGATATCTCAAATCATGCAAATCCATGCAACAATTTCAAAGCTAGAATCTCTTAGACCATCAAAACAAGTCAACACCCTTTTGACTCACTTAGTTAAACTTTGCACCCTCCCTTCATCCATTGACACTGAAGCCTTACCACAAGAGATTAAGAAAATGCGTGAGAGCCTCATTCCCATTTGTGGCAAAGCTGAAAGACTTTTAGAGCTTGAATTCTCATCTTTCATTAGTCTCACTCCAAATCCAATGAAAAACTTAACACTTTTCCCTTACTACCGAAACTATGTTAAACTACCAAACTACGAGTACAAAATCCTCGAACAAAATGGCGTTGCGCATACAGAAAAAGTAGCTTTCATTGGTTCTGGTCCAATGCCGCTAAGTTCATTCATATTAGCAACTCATCACATGGAATCAGCTAAGTTCATTCATATTAGCAACTCATCACATGGAATCAACACAATTTGA 519 0.3776 MGSFQTFNFETQIPTELLISQIMQIHATISKLESLRPSKQVNTLLTHLVKLCTLPSSIDTEALPQEIKKMRESLIPICGKAERLLELEFSSFISLTPNPMKNLTLFPYYRNYVKLPNYEYKILEQNGVAHTEKVAFIGSGPMPLSSFILATHHMESAKFIHISNSSHGINTI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08260 172 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 172 IPR004298 GO:0030410|GO:0030418
Vifa1g08260 172 Pfam Nicotianamine synthase protein 15 162 IPR004298 GO:0030410|GO:0030418
Vifa1g08260 172 Gene3D Vaccinia Virus protein VP39 16 171 IPR029063 -
Vifa1g08260 172 PANTHER NICOTIANAMINE SYNTHASE 3 15 162 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08260 Vifa-Chr1 1290535330 1290535848 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08260 17 168 Nicotianamine Synthase Gene Family AT5G56080 46.154 2.39e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08260 K05953 - gmx:100819726 226.868