Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08258 ATGGCTTCATTCCAATCCTTCAACTTTGAAACTCAAATTCCCCAAGAGCTTTTGATATCTCAAATCATGCAAATTCATGCAACAATTTCAAAGCTAGAATCTCTTAGACCATCAAAACAAGTCAACACCCTTTTGACTCACTTAGTCAATCTTTGCACCCTCCCTTCATCCATTGACATTGAAGCCTTACCACAAGAGGTAAAAAAAATGCGTGAGAGCCTCATTCCCCTTTGTGGCAAAGCCGAAGGACTTCTAGAACTCGAATTTTCATCTTTCATTAGTCTCACTCCAAATCCAATGAAAAACCTAACACTTTTTCCTTACTACGGAAACTATGTTAAACTAGCAAACTATGAGTACAAAATCCTCAAAGAAAATGGAGTTGCAAACGCGAAAATAGTAGCTTTCATAGGTTCCGGTCCAATGCCACTAAGTTCAATCATATTAGCAACTCATCACATGGAATCAACGCGATTCGATAACTTTGATATTGATGAGAAGGCTAATGAGGTTGCTAGCAAGATCGTGGATTCGGATAAAGCGCTCGAGAAGAGGATGAAGTTTGTGACACAAGATGTTATGGAAGTGAAAGAGAGGTTGGGAGAATATGATTGCATATTTTTGGCAGCGCTTGTTGGTATAAGTAGGTGTGAAAAAGTAAAGATTTTGGGACATATAAGAAAGTATATGAAAGAAGGTGGTGTTTTGGTAGTGAGAAGTGCAAAAGGGAGTAGGGGTTTTTTGTACCCTATTGTTGAAGAAGATGATATGGTGAATTTTGAAGTGCTTACTATCTTCCATCCAACAGATGATGTGATTAACTCGGTTGTTCTTCTTCGTAAACCTAATACTTGA 855 0.3813 MASFQSFNFETQIPQELLISQIMQIHATISKLESLRPSKQVNTLLTHLVNLCTLPSSIDIEALPQEVKKMRESLIPLCGKAEGLLELEFSSFISLTPNPMKNLTLFPYYGNYVKLANYEYKILKENGVANAKIVAFIGSGPMPLSSIILATHHMESTRFDNFDIDEKANEVASKIVDSDKALEKRMKFVTQDVMEVKERLGEYDCIFLAALVGISRCEKVKILGHIRKYMKEGGVLVVRSAKGSRGFLYPIVEEDDMVNFEVLTIFHPTDDVINSVVLLRKPNT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08258 284 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 284 IPR004298 GO:0030410|GO:0030418
Vifa1g08258 284 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Vifa1g08258 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 242 IPR029063 -
Vifa1g08258 284 PANTHER NICOTIANAMINE SYNTHASE 3 15 282 IPR004298 GO:0030410|GO:0030418
Vifa1g08258 284 Gene3D Vaccinia Virus protein VP39 17 283 IPR029063 -
Vifa1g08258 284 CDD AdoMet_MTases 162 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08258 Vifa-Chr1 1290311860 1290312714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08258 15 281 Nicotianamine Synthase Gene Family AT5G56080 51.292 4.75e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08258 K05953 - gmx:100819726 452.981