Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08250 ATGCTGTCGAATCATATCCAAAACGGAATCGAAACGGCGAGGCTCGCTTGGTCACGGATTCCCGACTCCGATGAACCGCAGTTCGCTGATGACGGCGTTGGTCTCCTTAAGAAGAACGATGGAAGCGCTGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGGGAAGAACAGGCGCATAGAAGAAGGAAGCTGTATGTGAGTTACTTGCTGGTAGTGAAATGGTTCTTTGCGTTGCTCATTGGCATTTTTACTGGATTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAATACTCGCTGACATTTAATATAATTCAGAAATCATATGTCGCTGGATTTTTCGTATATGTTTCGATCAATTTGGTTTTAGTTTACACTTCTGTATATATCGTCACACAATTTTCACCAGCAGCTGCTGGGTCGGGTATTCCTGAAATCAAGGGTTACTTAAACGGCGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGAGGCCTCGCTTTGGGTAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCTTCTTTGCTCGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGACCGGGATCGCCGTGATCTGGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGTGTGTTGTTTGCATTAGAAGAGGTTACATCCTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTTTTCACTTCTGCTATTGTTGCTGTTGTGGTGCGAACTGCGATGGGGTGGTGTAAGAGCGGGAAATGTGGACATTTTGGATCAGGCGGGTTCATAATATGGGATGTATCAGATGGTCAAGAGGATTATTCGTTTGCAGAGTTATTCCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCATGCCTTGTCTCTCTTCTAACATCAGTTATTTCATTTGGCTTGCCGCTTCTAAGAAAATGCAGTCCCTGCCCTGAACCTGATCCTACATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTATTGTAGCAAAGACAACGAATACAATGATCTTGCTACTATTTTCTTCAATACACAGGATGATGCTATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTCATGTTTTATGGTTTAGCAGTTGTCACGTTTGGTACTGCCGTGCCGGCTGGTCAATTTGTTCCCGGTATTATGATTGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATTGAAGAGGGAACGTATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGAATGACTGTCTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCTCTTATTATGCTCGTTCTTCTTATATCAAAGGCTGTTGGCGATGCTTTTAATGATGGCATCTATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTGCTAGAATCAAAGCCTAAGTATGAGATGAGGAACATGATAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTGGTATCTTTCCCTCGTGTTGTTAAGGTTCCAGATGTATTTTCCATTCTGCAGAGCAACACACACAACGGTTTTCCAGTTATTGATCACACAAGAAGCGGAGATCCACTTGTTATCGGACTAGTGCTTCGAAGTCATTTATTGGTCATTCTGCAGTCTAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAAGTGGAGGCAGATCAATAAGGCATGATTCCGGTGAATTTGCAAAGCCCGTTTCTAGTAAAGGAATATGTCTTGACGATATACATCTAACATCAGAGGACTTGGAAATGTACATAGATCTAGCCCCATTTTTGAATCCCTCACCGTATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGATGCAGAAAATGTGAATACATTAGAGCTACGGGCAACTAGTGTAAGAACTCAGCATCAGAATAGAAGATTGACGGCAAGGAATGTAGATGTGGAGCGCCCTTTGCTGAATGGTCTTCTGGCATAG 2394 0.4194 MLSNHIQNGIETARLAWSRIPDSDEPQFADDGVGLLKKNDGSAVESLDYEVIENFAYREEQAHRRRKLYVSYLLVVKWFFALLIGIFTGFAAVFINISVENFAGWKYSLTFNIIQKSYVAGFFVYVSINLVLVYTSVYIVTQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSVISFGLPLLRKCSPCPEPDPTSGIECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYGLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLESKPKYEMRNMIAKEACGSGRVVSFPRVVKVPDVFSILQSNTHNGFPVIDHTRSGDPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRSGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDAENVNTLELRATSVRTQHQNRRLTARNVDVERPLLNGLLA 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08250 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 754 - -
Vifa1g08250 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 38 760 - -
Vifa1g08250 797 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Vifa1g08250 797 SMART cbs_1 710 758 IPR000644 -
Vifa1g08250 797 SMART cbs_1 596 648 IPR000644 -
Vifa1g08250 797 Pfam Voltage gated chloride channel 135 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 SUPERFAMILY Clc chloride channel 61 577 IPR014743 -
Vifa1g08250 797 Pfam CBS domain 708 755 IPR000644 -
Vifa1g08250 797 CDD ClC_6_like 45 575 - -
Vifa1g08250 797 ProSiteProfiles CBS domain profile. 707 764 IPR000644 -
Vifa1g08250 797 FunFam Chloride channel protein 699 790 - -
Vifa1g08250 797 FunFam Chloride channel ClC3 69 386 - -
Vifa1g08250 797 MobiDBLite consensus disorder prediction 656 676 - -
Vifa1g08250 797 Gene3D - 597 760 IPR046342 -
Vifa1g08250 797 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g08250 797 Gene3D Clc chloride channel 70 576 - -
Vifa1g08250 797 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g08250 797 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g08250 797 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g08250 797 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g08250 797 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08250 Vifa-Chr1 1288097543 1288106902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08250 1 773 Ion Channels AT5G26240 82.687 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08250 K05016 - gmx:100811908 1441.02