Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08241 ATGGCTGATGAAGTGATTCTTCTAGGTTACTGGCCAAGTCCGTTTGGGATGAGGCTCAGAATAGCCCTTGCTCAAAAGGGTATCGAGTATGAGTATAAAGATGAAGACTTGCAGAACAAAAGCCCTTTGTTGTTACAGATGAACCCTATTCACAAGAAAATCCCTGTTCTCATTCATAATGGCAAACCCATTTGTGAATCTCTCATTGCTGTTCAGTATATTGATGAGGCTTGGAATGATAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGATTCTGGGCTGATTTTGGTGACAAGAAGGTCTATGAAAATGGAAGGAACCTTGTTTGGACCAAAAATGGAGAAGAGAAAGAAGCTGCAAAGAAGGAATTCATAGAAGCCCTCAAACTGTTGGAGCAAGAGCTGGGAGACAGGAGTTATTTTGGAGGAGAGAAGCTTGGTTATGTGGATGTAGCACTTATTCCATTCTACACTTGGTTTAAAGGCTATGAGACTTTTGGTAACATCAATATAGAGAAGGAGTGTCCCAAGTTTATTGATTGGGCTAAGAGATGTATCGAAATAGAGAGTGTTTCTAAGTCTATTCCTGATCAGGATAAGGTCTACCAGTTCATTGTGGAGGTCAGGAAGAAGAGGGGCATTGAGTAG 663 0.4103 MADEVILLGYWPSPFGMRLRIALAQKGIEYEYKDEDLQNKSPLLLQMNPIHKKIPVLIHNGKPICESLIAVQYIDEAWNDKSPLLPSDPYQRSQARFWADFGDKKVYENGRNLVWTKNGEEKEAAKKEFIEALKLLEQELGDRSYFGGEKLGYVDVALIPFYTWFKGYETFGNINIEKECPKFIDWAKRCIEIESVSKSIPDQDKVYQFIVEVRKKRGIE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08241 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 219 IPR010987 -
Vifa1g08241 220 SFLD Main (cytGST) 2 217 - -
Vifa1g08241 220 Pfam Glutathione S-transferase, C-terminal domain 121 189 - -
Vifa1g08241 220 FunFam Tau class glutathione S-transferase 1 87 - -
Vifa1g08241 220 CDD GST_N_Tau 5 78 - -
Vifa1g08241 220 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Vifa1g08241 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vifa1g08241 220 Gene3D - 88 220 - -
Vifa1g08241 220 Coils Coil 119 139 - -
Vifa1g08241 220 CDD GST_C_Tau 89 210 IPR045074 GO:0004364|GO:0006749
Vifa1g08241 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 208 IPR045073 -
Vifa1g08241 220 FunFam Glutathione S-transferase U20 88 220 - -
Vifa1g08241 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Vifa1g08241 220 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Vifa1g08241 220 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Vifa1g08241 220 Gene3D Glutaredoxin 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08241 Vifa-Chr1 1287074682 1287075431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08241 1 220 Glutathione S-transferase Gene Family AT1G17180 66.364 2.44e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08241 K00799 - gmx:547520 364.77