Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08237 ATGGCTGAACCTGGATTGCCATCTCAGGAAAATCCGTTACCTTTTTCTGGTCTAGTTGGATTCGATATCGGCACGTCGGAATGCAGTGTTGCTGTGTCCAATGGTTCCCAAGTCACGCTATTGAAAAACAGAATAAATCAAAAGTTTACGAAATCATTTGTCACTTTCAAAGATCAAGCCACTTCTAGTGGAGTTACGAGACCACTCTCCGACGACCTTGAGATGCTGTCTGGAGATACAGTTTTCAACATGAAACGCCTTATTGGTAGAGTTGATACTGATCCAGTAGTCCGTGCTAGTAAATATCTCCCTTTTCTCGTGCAGACTTTGGATATTGGTGTTCGACCCTACATTGCTGCGTTTGTGAACTTTGTTTGGAGAGCCACCACTCCAGAAGAAGCCCTTGCAAAGCTTCTGGTGGATTTAAAACTGATGACGGAAACTCATCTGAAAGGACCGATAAAAGGTGTAGTGCTTACAGTTCCAGTTTCCTTCAGTCGTTTCCAGCAGGCCCGCCTAGAACGTGCCTGTGGGATGGCTGGTTTTCCCACTATTAGGACGATGCCTGAACCAACAGCAGTGGCATTGTTATATGCACAGCAACAACAGAAAGCTTCTCAGAAATCTATGGGCAGTGGAAGTGAGAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTTTTGTGACGTTGCTGTGACTGCTACCGGTGGAGGTAAACCTGAGATAAAAGCCTTGGCAGGAAGTACTATTGGTGGAGAAGACTTGCTTCAGAATATGATGCGCCATCTCTTACCAGATTTTGAAAATACATTCAAGAGCCGTGGGTTCAAAGAAATCCAATCAATGGCATTGCTTCGAGTTGCAGCCCAGAATGCAATTCATCAGCTTTCGTATCTAACCGGTACTGAGGTCGATGTAGACTTAGGAGATGGTTTGAAGGTATACAAGGTTGTTGACAGGGCTAAGTTTGAGGAGGTGAACAAAGAGGTGTTTGAAAAGTGTGAAAGCCTTGTCTTCCAGTGTTTACATGAAGCAAAGGTAGAAGCTGAAAATGTAAATGATGTGATAATTGTTGGTGGATGTTCTTATATCCCAAAGGTGAAGAATCTTGTTACTAATATATGCAAAGTAACAGAAGTTTATAGTGATATAAAACCTTTGGAAGGTGCCGTTTGTGGTGCAGCAATCCAAGGAGCGATCACTTCAGGTATCATTGATCCTTTAGGAAAATTGGACTCGTCAAAGATTCATGCCACACCTCTTGCCATTGGAATCCGAGCGGATGGGAACAAGTTTGTCACTATAATGCCGAGGAGCACCACATTGCCAGCGCGTAAGGGTCTACTTTTTACAACTATTCACGACAACCAAACTGAGGCATTGATAGTTGTCTACGAAGGTGAGGAGGGAAAGCAGCCCGAAGAAAATCACTTGTTGGGATATTTCAAGATAATGGGAATACCTCCAGCACTAAAAGGAGTTCCCGGAATCAGTGTGCACATGGATCTAGATACTTCCAACAAGCTGGGAGTTTTAACTGCTGTTGCGATGCCTGGAACCCATCAAGCTGCAGTTCCTGTTATGCAAGTGAGGATGCCAATGGTTGATGATGCGCATGGTTGGTGTGCTGAGGGCCTAAATAAAACCTTTGGTGACACAATGGATTTGGTCACTTTCAAAAGAGGCATAAATTGA 1695 0.4378 MAEPGLPSQENPLPFSGLVGFDIGTSECSVAVSNGSQVTLLKNRINQKFTKSFVTFKDQATSSGVTRPLSDDLEMLSGDTVFNMKRLIGRVDTDPVVRASKYLPFLVQTLDIGVRPYIAAFVNFVWRATTPEEALAKLLVDLKLMTETHLKGPIKGVVLTVPVSFSRFQQARLERACGMAGFPTIRTMPEPTAVALLYAQQQQKASQKSMGSGSEKIALIFNMGAGFCDVAVTATGGGKPEIKALAGSTIGGEDLLQNMMRHLLPDFENTFKSRGFKEIQSMALLRVAAQNAIHQLSYLTGTEVDVDLGDGLKVYKVVDRAKFEEVNKEVFEKCESLVFQCLHEAKVEAENVNDVIIVGGCSYIPKVKNLVTNICKVTEVYSDIKPLEGAVCGAAIQGAITSGIIDPLGKLDSSKIHATPLAIGIRADGNKFVTIMPRSTTLPARKGLLFTTIHDNQTEALIVVYEGEEGKQPEENHLLGYFKIMGIPPALKGVPGISVHMDLDTSNKLGVLTAVAMPGTHQAAVPVMQVRMPMVDDAHGWCAEGLNKTFGDTMDLVTFKRGIN 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08237 564 Gene3D Actin; Chain A, domain 4 252 333 - -
Vifa1g08237 564 CDD HSP70_NBD 19 399 - -
Vifa1g08237 564 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 412 525 IPR029047 -
Vifa1g08237 564 FunFam Heat shock 70 kDa protein 8 252 333 - -
Vifa1g08237 564 Gene3D - 203 381 - -
Vifa1g08237 564 FunFam Heat shock 70 kDa protein 8 407 523 - -
Vifa1g08237 564 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 418 521 IPR029047 -
Vifa1g08237 564 Pfam Hsp70 protein 19 511 IPR013126 GO:0005524|GO:0140662
Vifa1g08237 564 SUPERFAMILY Actin-like ATPase domain 214 400 IPR043129 -
Vifa1g08237 564 Gene3D - 19 399 - -
Vifa1g08237 564 Gene3D - 82 137 - -
Vifa1g08237 564 SUPERFAMILY Actin-like ATPase domain 19 200 IPR043129 -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 384 404 - -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 352 368 - -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 494 510 - -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 45 57 - -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 157 177 - -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 17 30 - -
Vifa1g08237 564 PRINTS 70kDa heat shock protein signature 412 431 - -
Vifa1g08237 564 PANTHER HEAT SHOCK PROTEIN 70KDA 19 511 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08237 Vifa-Chr1 1286044496 1286046190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08237 19 511 Calmodulin-binding Proteins AT3G12580 35.200 4.85e-84 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08237 K09489 - gmx:100809773 744.962