Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08231 ATGGCCGATGCAGTGACTCTTCTCGATTACTGGCCAAGCCCGTTCGGAATGAGGCTCAGAATAGCCCTTGCTGAAAAGGGTATCAAGTATGAGTACAAAGATGAAGACTTGAGGAACAAAAGCCCTTTGTTGTTACAGATGAACCCTATCCACAAGAAAATCCCTGTTCTCATTCACAATAGTAAACCCATTTGTGAATCTCTCATTGCTGTTCAGTATATTGATGAGGTTTGGAATCATAAATCTCCATTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGATTCTGGGCTGATTTTGTTGACAAGAAGATCTATGAGATTGGAAGGAACCTTTGGACCAAAAATGGAGAAGAGAAAGAGGCTGCAAAGAAGGGATTCATAGAAGCCCTCAAACTGTTGGAGCAAGAGTTGGGAGACAAGAGTTATTTTGGAGGAGAGAAGCTTGGTTATGTGGATGTAGCACTTATTCCATTCTACACTTGGTTTAAAGGCTATGAGACTTTTGGTAACATCAATATAGAGAAGGAGTGTCCCAAGTTCATTGGTTGGGCTAAGAGATGTATCAAGATTGAGAGTGTTTCTGAGTCTATTCCTGATCAGGATAAGGTCTATCAGTTCATTGTGGAGATCAGGAAGAAGATATGCATTGAGTAG 660 0.4106 MADAVTLLDYWPSPFGMRLRIALAEKGIKYEYKDEDLRNKSPLLLQMNPIHKKIPVLIHNSKPICESLIAVQYIDEVWNHKSPLLPSDPYQRSQARFWADFVDKKIYEIGRNLWTKNGEEKEAAKKGFIEALKLLEQELGDKSYFGGEKLGYVDVALIPFYTWFKGYETFGNINIEKECPKFIGWAKRCIKIESVSESIPDQDKVYQFIVEIRKKICIE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08231 219 FunFam Glutathione S-transferase U20 88 219 - -
Vifa1g08231 219 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Vifa1g08231 219 FunFam Tau class glutathione S-transferase 1 87 - -
Vifa1g08231 219 Gene3D Glutaredoxin 1 87 - -
Vifa1g08231 219 CDD GST_N_Tau 5 78 - -
Vifa1g08231 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vifa1g08231 219 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Vifa1g08231 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Vifa1g08231 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
Vifa1g08231 219 SFLD Glutathione Transferase (cytosolic) 2 216 IPR040079 -
Vifa1g08231 219 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Vifa1g08231 219 Gene3D - 88 219 - -
Vifa1g08231 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 207 IPR045073 -
Vifa1g08231 219 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Vifa1g08231 219 Pfam Glutathione S-transferase, C-terminal domain 120 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08231 Vifa-Chr1 1285780544 1285781292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08231 1 219 Glutathione S-transferase Gene Family AT1G78380 66.667 5.80e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08231 K00799 - gmx:547520 379.793