Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08230 ATGGCTGATGAAGTGATTCTTCTAGATTTCTGGCCAAGTCCGTTTGGGAAGAGGCTTAAAATAGCCCTTGCTGAAAAGGGTATCAAGTATGAGTACAAAGAAGAGGACTTGAGCAACAAAAGTCCTTTGTTGTTACAGATGAACCCTATTCACAAGAAAATTCCTGTTCTTATTCATAATGGTAAAGCCATTTGTGAATCTCTCATTGCTGTTCAGTATATTGATGAGGCTTGGAATGATAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGATTCTGGGCTGATTTTGGTGACAAGAAGATCTATGAAAGTGGAAGGAACCTTTGGACCAAAAAAGGAGAAGAACAAGAAGCTGCAAAGAAGGAATTCATAGAAGTCCTCAAATTGATGGAGCAAGAGTTGGGAGACAAGAGTTATTTTGGAGGAGAGAAGCTTGGTTATGTGGATGTAGCACTTATTCCATTCTACACTTGGTTTAAAGGCTATGAGACCATTGCTAACATCAATATAGAGAAGGAGTGCCCCAAGTTCATTGGTTGGGCTAAGAGATGTATCAAGATTGAGAGTGTTTCAAAGTCTATTCCTAATCAAGATAAAGTCTATCAGTTCATCATGGAGATGAGGAAGAATATGGGCATTGAGTAG 660 0.3909 MADEVILLDFWPSPFGKRLKIALAEKGIKYEYKEEDLSNKSPLLLQMNPIHKKIPVLIHNGKAICESLIAVQYIDEAWNDKSPLLPSDPYQRSQARFWADFGDKKIYESGRNLWTKKGEEQEAAKKEFIEVLKLMEQELGDKSYFGGEKLGYVDVALIPFYTWFKGYETIANINIEKECPKFIGWAKRCIKIESVSKSIPNQDKVYQFIMEMRKNMGIE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08230 219 Gene3D Glutaredoxin 1 87 - -
Vifa1g08230 219 FunFam Glutathione S-transferase U20 88 219 - -
Vifa1g08230 219 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Vifa1g08230 219 SFLD Main (cytGST) 2 217 - -
Vifa1g08230 219 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Vifa1g08230 219 CDD GST_N_Tau 5 78 - -
Vifa1g08230 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vifa1g08230 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 207 IPR045073 -
Vifa1g08230 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
Vifa1g08230 219 FunFam Tau class glutathione S-transferase 1 87 - -
Vifa1g08230 219 Pfam Glutathione S-transferase, C-terminal domain 122 188 - -
Vifa1g08230 219 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Vifa1g08230 219 Gene3D - 88 219 - -
Vifa1g08230 219 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Vifa1g08230 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08230 Vifa-Chr1 1285662277 1285663035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08230 1 219 Glutathione S-transferase Gene Family AT1G17180 65.297 2.06e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08230 K00799 - gmx:547520 377.096