Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08227 ATGGCTGATTCGAACCCCATTCACGATGACCCATCAACGATTCCATCGCTCTCAACCGATGACCCTAATGATGCAGGAAATGATGTGAAGTTGAGTTCTAAGGACCAGAGAGATGCTCTGCCAGTTTGGAATGTAAACAGTCGAGGTGACCAGATTCAGGCTGAATTGCTTCGAAAGAAACTTGACATTCACGTGAAGGGTTTTGTGTCGGCACCTGTTTTATCGTTTGCTTCGTGTAACCTCCCTGACAAACTACTGCATAACATCGAAGGAGCTGGATATGAGATGCCTACGCCTGTTCAAATGCAAGCAATCCCTGCTGCTTCGATGGGGAAGAACATGCTTGTTTTGGCCGATACAGGATCTGGAAAGTCCGCTTCCTTTCTTATTCCAATAATTTCCCGTTGTGCGATTCATCGTTTGACTTATGTTTCGGATAAGAAAAAGCCTTTAGCTATGGTGTTAACACCTACAAGAGAGCTTAGTATACAGGTTGAAGAGCATGCGAAATTGCTCGGAAAAGGATTGCCGTTTAAAACTGCACTTGTGGTTGGTGGTGATGCAATGGCTAGACAAATCTATCGCATTCAACAAGGAGTCGAGTTGATTGTAGGAACACCGGGAAGGCTAGTTGATCTTTTAACAAAGCATGAGATTGAATTAGACGGAGTAATGACTTTTGTTGTCGATGAGGTGGATTGCATGCTTCAAAGTGGTTTTCGAGATCAGGTCTTACAAATATTTACGGCTTTGTCGCAACCTCAGGTCTTAATGTATTCGGCAACAATGTCTGATTCTTTAGAGAAGATGGCGAACTCTCTCGCAAAAGATACAGTGATTATAACCGTCGGTGAACCTAACAGACCAAATAAGGCCGTGAAGCAACTAGCTATTTGGGTCGAGTCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATACGTCGGCTCGAGACTCGGGGCAGATCTACTTGCAAATGCAATTACAGTTTCAACAGGAATGAAAGCTGTTTCGATTCACGGCGAGAAGTCAATGACTGAAAGGCGAGAAATAATGCAATCATTTATGGTCGGCGAGTTCCCGGTGGTTGTGGCTACCGGGGTTTTGGGTAGGGGGGTCGATCTATTGGGTGTAAGACAAGTAATTGTATTTGACATGCCGAATTCCATTAAGGAGTATGTGCATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTGAAGCCATAGTTTTTATAAATGATGAGAATAAGAATGTTTTTGCAGAGTTAGTCGATGTATTAAAGTCGGGTGCGGCGGCTATACCTAGGGAGCTTATCAATTCACAATATGCCACTGGATTTTTCTCAGGGGGCAAGGGTTCAAAGAAGAGAAAGCATAGATGA 1422 0.4332 MADSNPIHDDPSTIPSLSTDDPNDAGNDVKLSSKDQRDALPVWNVNSRGDQIQAELLRKKLDIHVKGFVSAPVLSFASCNLPDKLLHNIEGAGYEMPTPVQMQAIPAASMGKNMLVLADTGSGKSASFLIPIISRCAIHRLTYVSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQIYRIQQGVELIVGTPGRLVDLLTKHEIELDGVMTFVVDEVDCMLQSGFRDQVLQIFTALSQPQVLMYSATMSDSLEKMANSLAKDTVIITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIYVGSRLGADLLANAITVSTGMKAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEAIVFINDENKNVFAELVDVLKSGAAAIPRELINSQYATGFFSGGKGSKKRKHR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08227 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 284 IPR027417 -
Vifa1g08227 473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 281 IPR014001 -
Vifa1g08227 473 SMART ultradead3 93 296 IPR014001 -
Vifa1g08227 473 Pfam DEAD/DEAH box helicase 98 269 IPR011545 GO:0003676|GO:0005524
Vifa1g08227 473 Gene3D - 45 282 IPR027417 -
Vifa1g08227 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 292 455 IPR001650 -
Vifa1g08227 473 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 69 454 - -
Vifa1g08227 473 Gene3D - 283 457 IPR027417 -
Vifa1g08227 473 CDD SF2_C_DEAD 293 425 - -
Vifa1g08227 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 430 IPR027417 -
Vifa1g08227 473 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g08227 473 SMART helicmild6 334 416 IPR001650 -
Vifa1g08227 473 MobiDBLite consensus disorder prediction 9 26 - -
Vifa1g08227 473 Pfam Helicase conserved C-terminal domain 306 416 IPR001650 -
Vifa1g08227 473 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 74 102 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08227 Vifa-Chr1 1285101963 1285103812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08227 75 436 Eukaryotic Initiation Factors Gene Family AT1G72730 32.418 1.61e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08227 K19466 - gmx:100781473 676.011