Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08216 ATGGCAGTAGGGAAGAACAAACGGATTTCAAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCGCTGATCCCTTTGCAAAGAAGGACTGGTATGACATCAAAGCCCCTTCTGTATTCCAGGTCAAAAATGTTGGCAAAACACTTGTCTCCCGTACTCAGGGTACCAAGATTGCTTCTGATGGACTCAAACATCGTGTGTTTGAGGTGTCATTGGCTGATCTTCAAGCAGATGAAGACAATGCTTTCAGGAAGATCAGGCTTAGGGCTGAAGATGTTCAGGGGAAAAACCTCCTCACCAACTTCTGGGGTATGGATTTCACAACTGACAAGCTCAGGATGTTTTGCATTGGGTTCACTAAGAGGCGAGCAAACCAAGTTAAGAGGACTTGTTATGCCCAATCAAGCCAGATCAGACAGATCCGTAGGAAGATGAGGGAGATTATGGTTAACCAGGCAACATCCTGTGACCTGAAAGAGCTTGTGCGCAAATTTATCCCTGAGATGATTGGAAAGGAGATTGAGAAGCACACATGTGGCATCTACCCTCTCCAGAATGTTTTCATTCGTAAAGTCAAGATCCTGAAAGCTCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTCGGCACCAAGGTGGAAAGACCAGTTGATGACACAGTGGTTGAGGGTACCCCCGAAATTGTTGGAGCTTGA 711 0.4585 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQADEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKHTCGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPVDDTVVEGTPEIVGA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08216 236 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g08216 236 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g08216 236 Hamap 40S ribosomal protein S1 [RPS3A]. 1 227 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vifa1g08216 236 SMART Ribosomal_S3Ae_2 15 196 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vifa1g08216 236 Pfam Ribosomal S3Ae family 16 112 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vifa1g08216 236 Pfam Ribosomal S3Ae family 109 196 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vifa1g08216 236 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 112 - -
Vifa1g08216 236 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08216 Vifa-Chr1 1283964196 1283965885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08216 1 236 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 76.718 2.03e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08216 K02984 - gmx:100805519 385.571