Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08210 ATGGCGAATGCAATACAATTAGCAATTGGTGATGCAGTATTAACCTTCATATGGATTTTCATTTCTTCAACCCTAGGATTAGTCACTTCAGAAATTCTGAAAGCTTTTAATCTTGAATTTGTGACATACAATGGAAATGCTTCTTTCTATGCTGCTGGCCTTGGCTCTGATACCCTTTTCTCTATGGCTATTCGTTTCCCTGCTCAGGCATTAGGTGCAGTGGGTGGTGCTATGGCAATTAAGGAAGTAATGCCACCAAAATATCTGCACATGATTGGAGGACCTGTTTTGAAAGTTGATTTGCATACAGGAGCTATTGCAGAAGGAGTGTTGACATTTGTAATCACTTTTCTTGTTCTCTCCATCATAATCAAAGGTCCTCGTAGTGAGTTCATCAAGACTTTGATGATGTCTATTTCCACCGTAGCTGTGATCATCGCCGGTACTGCTTACACCGGACCATCCATGAATCCTATCCTTGCATATGGTTGGGCATATTTAGACAACTGGCACCACACATGGGATCAATTCTATGTTTATTGGATTTGTCCATTCATTGGAGCAATACTTGCTGCTTGGTTGTTTCGTGTTGTCTTCCCTCCTCCACAAAAAGTCGTAAAACACAAGAAAGCTTGA 636 0.4088 MANAIQLAIGDAVLTFIWIFISSTLGLVTSEILKAFNLEFVTYNGNASFYAAGLGSDTLFSMAIRFPAQALGAVGGAMAIKEVMPPKYLHMIGGPVLKVDLHTGAIAEGVLTFVITFLVLSIIIKGPRSEFIKTLMMSISTVAVIIAGTAYTGPSMNPILAYGWAYLDNWHHTWDQFYVYWICPFIGAILAAWLFRVVFPPPQKVVKHKKA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08210 211 PRINTS Major intrinsic protein family signature 107 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g08210 211 PRINTS Major intrinsic protein family signature 138 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g08210 211 PRINTS Major intrinsic protein family signature 178 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g08210 211 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g08210 211 Gene3D Glycerol uptake facilitator protein. 2 210 IPR023271 -
Vifa1g08210 211 PANTHER AQUAPORIN SIP1-1 45 210 IPR044222 GO:0015250
Vifa1g08210 211 SUPERFAMILY Aquaporin-like 5 205 IPR023271 -
Vifa1g08210 211 Pfam Major intrinsic protein 66 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08210 Vifa-Chr1 1282785739 1282788240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08210 1 199 Major Intrinsic Protein MIP AT3G04090 47.137 5.26e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08210 K09875 - gmx:100788738 312.383