Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08209 ATGCTAAAGCGCTCCGGCCGGCAGCCCCCGGTGCCGGCGCCGGAGTCGCTCATCGACAAGATCTACCAATTCCGTGGCGCCTGTCTAATGGTGGCACTCCCTCTACTCCTCGTCACACTCATACTCTACATCATGCCTTCCACTTCTTCCAATGAATCCATCGAGGATTACGCCCTAACGCACCGTAAGATTTCTCCTGATCGGAAACTCTCCGATTCGTTTGCTGTCGTTTTCGACGCTGGTAGCTCCGGTAGCCGTGTTCATGTCTTTCGGTTTGATCGGAAGCTTGATCTTGTTCATATTGGTAATGATCTCGAGGTTTTCTTGCAGATAAAACCTGGTTTGAGTGCTTATGCACAGGATCCACGACAGGCAGCGGAATCTCTTATTTCTCTTTTGGATAAAGCAGAAAGTGTCGTTCCTATGGAGTATCGCCCCGTGACACCAGTTAGAGTTGGGGCAACTGCAGGATTGCGGGCTTTGGAAGGGGATGCTTCTGATAGGATCTTGCAAGCGGTCCGAGATTTGCTTAAGCAAAGAAGTACTCTAAAATCGGAGCCTGATGCAGTTGCTGTGCTAGATGGAACCCAAGAAGGTGCTTTTCAATGGGTGACTATTAACTATCTATTGGGAAAGTTGGGAAGAGATTATTCTGACACTGTCGGGGTAGTTGATCTTGGAGGTGGATCGGTTCAAATGGCATACGCCATCTCTGAGACAGGTGCTACCAAGGCTCCAAAAGCATCCGATGGAGAAGACCCTTATGTCAAGGAAATGTTCTTAAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTACGCTATGGTTTACTAGCAGCTCGGGCAGAGATTTTAAAGATTTCTGATGATTCTGGAAACCCTTGCATCTTAGCTGGCTTTGATGGTTCTTACAATTACGGAGGAAAGCCATTTAAGGCTTCGTCCTCCTCTTCTGGCTCAAGCTTGAATGAATGCAAAAGCATAGCTCTTAAGACTCTCAAGGTTAATGAGTCAACATGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGCGGCGGCGATGGACAGAAGAATCTTTTTGTCGCCTCATTTTTTTTCGACCGGGCTGTGGAGGCTGGTTTTGCTGATCCAAAGTCACCTGTCGCAAAAGTTAGTCCAGTGGATTTTGAGAATGCAGCAAAACAAGCTTGTCAAACAAAACTCGAGGATGCCAAATCTATTTATCCACACGTTGAGGAGGGGAACCTTCCATATTTATGCATGGATCTTGTATACCAGTATACGCTGCTTGTTTTTGGATTTGGCCTAGATCCACTACAGCAGATTACATTAGTGAAGCAAGTTAAATATCATGATTCTCTTGTTGAAGCTGCATGGCCCCTAGGCAGCGCTATAGAAGCTGTATCATCTATACAATGA 1431 0.4612 MLKRSGRQPPVPAPESLIDKIYQFRGACLMVALPLLLVTLILYIMPSTSSNESIEDYALTHRKISPDRKLSDSFAVVFDAGSSGSRVHVFRFDRKLDLVHIGNDLEVFLQIKPGLSAYAQDPRQAAESLISLLDKAESVVPMEYRPVTPVRVGATAGLRALEGDASDRILQAVRDLLKQRSTLKSEPDAVAVLDGTQEGAFQWVTINYLLGKLGRDYSDTVGVVDLGGGSVQMAYAISETGATKAPKASDGEDPYVKEMFLRGRKYYLYVHSYLRYGLLAARAEILKISDDSGNPCILAGFDGSYNYGGKPFKASSSSSGSSLNECKSIALKTLKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAVEAGFADPKSPVAKVSPVDFENAAKQACQTKLEDAKSIYPHVEEGNLPYLCMDLVYQYTLLVFGFGLDPLQQITLVKQVKYHDSLVEAAWPLGSAIEAVSSIQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08209 476 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 193 208 IPR000407 GO:0016787
Vifa1g08209 476 Pfam GDA1/CD39 (nucleoside phosphatase) family 71 475 IPR000407 GO:0016787
Vifa1g08209 476 CDD NBD_sugar-kinase_HSP70_actin 76 235 - -
Vifa1g08209 476 Gene3D Exopolyphosphatase. Domain 2 194 453 - -
Vifa1g08209 476 Gene3D - 74 469 - -
Vifa1g08209 476 FunFam Apyrase 1 194 453 - -
Vifa1g08209 476 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 19 474 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08209 Vifa-Chr1 1282538811 1282542410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08209 15 474 Calmodulin-binding Proteins AT3G04080 66.957 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08209 K14641 - gmx:100804818 771.926