Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08208 ATGGATACACCAGAGAGAAACCAAATCAGCACCGCTCTCTCTAAATTCGAGGATTCACCGGTGTTCAACTATATTAATAATTTATCTCCTATAAGGCCGGTGAAATCTGCTCATATTACTCAAACTTTCAATTCACTTAGCTTTTCATCTCCTCCATCTGTTTTCACATCACCTCATGTTACCTCTTTCAAGGAGTCTAGATTCCTACGCAGACATAATCCACCGAGCCCATTGAAGCCCAAGGATTCATCTGAAGATGTAAATAAAGTGTACTCAAATGACGAGGCTTCGGCAGATTCTACTCTTTCACATCATAACTCAAGCGAGTTACATGAAAGCGCCGATAAAGGAATATTGGTAGGAGATGTTTCTATTGCGTTATCCATCGAACAAACGAAATTCTCTGATGAGCTACCACAGTCATTACAATATAATTGTGGTAGTCCTGGCTATGATCCTCCACTTTGTTGTGATGACGGTAACTCTATTTTGGAATTGCCCAGTGAGGCTGCGTCTGATGTTGGGTTTGTTCAGGAAGGTTGTAAAACAGATTCGGCAGAGCCTGAATTGCATCTTCAAGGAACAAGTCAGATTGATCTAAAAGGTGAAGGCTCAGACTGTGATTGGGATGGTTTACTTCACAATGGTTCTGATTTGTTAATTGAAGAAGAAGCTTTTAAGGGTCTAATGCAGAAACCATTGGGATCTTCTTTAAGACTTTGTGATTATGTGCCCCTTCAGCAATCTGCCTGTAATAATGATCAGAACGTACACATGGTTGATTCAGTTGCTTCTGCTTCTGAACATGAAATTGAAAATCATAGTTCTGAGCTAGTTGTCGCGGTGGACACTGACCATACACAGGACAGTCTTGCTAATGGTTCTTTCTTGACTAGCAATCCAAATGAGAAAATGGACAATCAGCTTGTTTCTGTCACACACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCGGTGTACGAAAGAACTCCGATGATAATTCTAACACTGGATCTAGTACAGCGCAATCTGAAGTAAGGAATGCTTCCGACGATAAACAACTGCTCCCTGCAAAACGCAATGCAAATTCACAAAAGGGCATTTTGCCGGGTATCGGTTTACACTTGAATGCACTTGCTCCCTTAAAGGATGGCACAGGAATACAAAACAGAAATTTAACTTCTGGAAGACAACTCAGTCTCACCAACTCTACTTCCTTGCTACTTTCTGCATGCCAAGAACATCAGCATCTATCGATTGTATCTGTATCAGTTTCTTCTGAAAGAGAATTGGACCTATCTGGCAATGATGTTCAGCCTGCTGAAGATTCTTCCCTTGTACCAGCTTACACGGCTGATGAAGATTTCAATCCGAATAGCCCCAAAAAGAAAAAGCGTAAGTCAGAGCCAGTTGGAGATACTTCTGAGGGCTGCAAACGCTGTAATTGCAAGAAATCTAAGTGCCTGAAACTTTATTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTGTTCATGAAGATACAGTTCTTCAAACTCGAAAGCAAATTGAATCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATTCGAAGTGCTGACTCTGTGCCTGAAATTGGGATTGACCCAAACAAAACTCCAGCTTCAGCCCGCCACAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTGGCTGCAGATGTGAAGGGTGCAAGAACGCATTTGGTAGAAAGGATGGTTCTACTTCTATAGTGACAGAAGGCGAGACAGAAGAAGAAACAGAGACTAGTGACAAGGGTGTGGAGGAAAAAGCTATTCAGAAAACTGAATTTCAGAATATCGAAGATCATTTGGAATCTACCATGGTTGCAACACCATTACGGATTTCCAGGCCAATGCTTCCTATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACCGGTTCTGGATATTTTACCAGCCAAAAGCTTGCGAAACCAAATCCTCTTTGGTCTCAACCCAAGTCTTTTCAGACTGTTGCAGACGATGAAATGCCAGAAATTCTTCGTGGTGATAGTTCTCCTATTGCGTGCATCAAAACTTCATCTCCAAATGGGAAGAGAGTTTCCTCTCCTAACTGTGAAATAAGATCATCTCCAACTCGCAGAGGTGGCAGAAAATTGATATTGCAATCTATTCCTTCATTTCCTTCTCTCACCCCTCGTCCTTAG 2313 0.4233 MDTPERNQISTALSKFEDSPVFNYINNLSPIRPVKSAHITQTFNSLSFSSPPSVFTSPHVTSFKESRFLRRHNPPSPLKPKDSSEDVNKVYSNDEASADSTLSHHNSSELHESADKGILVGDVSIALSIEQTKFSDELPQSLQYNCGSPGYDPPLCCDDGNSILELPSEAASDVGFVQEGCKTDSAEPELHLQGTSQIDLKGEGSDCDWDGLLHNGSDLLIEEEAFKGLMQKPLGSSLRLCDYVPLQQSACNNDQNVHMVDSVASASEHEIENHSSELVVAVDTDHTQDSLANGSFLTSNPNEKMDNQLVSVTHRGIRRRCLDFEMAGVRKNSDDNSNTGSSTAQSEVRNASDDKQLLPAKRNANSQKGILPGIGLHLNALAPLKDGTGIQNRNLTSGRQLSLTNSTSLLLSACQEHQHLSIVSVSVSSERELDLSGNDVQPAEDSSLVPAYTADEDFNPNSPKKKKRKSEPVGDTSEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEIGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSTSIVTEGETEEETETSDKGVEEKAIQKTEFQNIEDHLESTMVATPLRISRPMLPMPFSSKGKPPRSFVTTITGSGYFTSQKLAKPNPLWSQPKSFQTVADDEMPEILRGDSSPIACIKTSSPNGKRVSSPNCEIRSSPTRRGGRKLILQSIPSFPSLTPRP 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08208 770 MobiDBLite consensus disorder prediction 459 480 - -
Vifa1g08208 770 MobiDBLite consensus disorder prediction 67 87 - -
Vifa1g08208 770 MobiDBLite consensus disorder prediction 331 352 - -
Vifa1g08208 770 MobiDBLite consensus disorder prediction 330 359 - -
Vifa1g08208 770 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 567 602 IPR005172 -
Vifa1g08208 770 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 481 516 IPR005172 -
Vifa1g08208 770 SMART CXC_2 478 519 IPR033467 -
Vifa1g08208 770 SMART CXC_2 564 605 IPR033467 -
Vifa1g08208 770 MobiDBLite consensus disorder prediction 723 745 - -
Vifa1g08208 770 ProSiteProfiles CRC domain profile. 479 604 IPR005172 -
Vifa1g08208 770 MobiDBLite consensus disorder prediction 611 630 - -
Vifa1g08208 770 MobiDBLite consensus disorder prediction 722 770 - -
Vifa1g08208 770 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 768 IPR044522 GO:0003700
Vifa1g08208 770 MobiDBLite consensus disorder prediction 434 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08208 Vifa-Chr1 1282355207 1282359462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08208 16 769 CPP Transcription Factor Family AT4G14770 44.416 5.78e-155 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa1g08208 TCR 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08208 - - mtr:11423771 1180.62