Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08205 ATGGATTTTGAAGGTGGTAGGACACCAAAGAAGGAGATGGAAGGAGAAGGAGGTGTGACGGGTTCGAAGATGAAGGGTGCTGGAAATCAAAGTAGTAAAGATATGATTTTCAGAGCTGATAGGATTGATCTCAAGAGCTTGGATGCTCAATTGGAAAAGCACTTAAGCAGGGTTTGGTCGAGAAATACTAATGAGTCGAAAAGGCCTAAAGAAGAATGGGAGATTGAATTGGCGAAATTGAATTTGAGATATATTGTTGCTCATGGGGCTTATGGAACTGTCTATAGAGGCACATATGATACTCAAGATGTTGCAGTGAAAGTGTTGGATTGGGGTGATGATGGTGTCGCCACTGCTGCTGAAACTTCCGCTTTACGCGCATCTTTTAGGCAGGAGGTTGCCGTCTGGCACAAACTTGACCATCCAAATGTCACAAAGTTTGTCGGAGCTTCAATGGGAACTTCGAATCTTAAGATTCCTTCAAAAAACTCTACCGACAATCAAGAGACCCTTCCTTCTAGGGCATGTTGTGTTATCGTCGAGTTTCTCACTGGTGGAACGCTGAAACAATACTTGATAAAAAACAGGCGGAAGAAACTCGCGTATAAGATTGTGGTTCAGCTTGCTTTGGACCTCTCCAGAGGTCTTAGCTATCTGCATTCGAAGAAGATTGTTCATCGTGATGTTAAGTCGGAGAATATGTTGCTAGATGGTAACCGGAATCTAAAGATAGCTGATTTTGGAGTTGCTCGCGTGGAAGCTATGAATCCAAGTGACATGACTGGTGAAACTGGGACCCTCGGATATATGGCTCCCGAGGTTTTGGATGGTAAACCTTACAACAGGACATGTGATGTCTACAGCTTTGGCATTTGCTTGTGGGAAATGTATTGCTGTGATATGCCTTATCCTGATCTAAGCTTTGCTGACGTGTCCTCTGCTGTCGTCCGTCAGAACTTACGACCAGAAATCCCGAGGTGTTGTCCAAGTGCATTGGTGAACATCATGCGTAAGTGCTGGGATGGTAATCCGAGCAAACGTCCGGAAATGGAGGAGGTGGTGAGAATGCTGGAAGCACTGGATACAAGCAAAGGTGGCGGAATGATACCGGAAGATCAGAGTTCTGGTTGCTTTTGTTTTGCACCGGCTCGTGGTCCTTAA 1161 0.4505 MDFEGGRTPKKEMEGEGGVTGSKMKGAGNQSSKDMIFRADRIDLKSLDAQLEKHLSRVWSRNTNESKRPKEEWEIELAKLNLRYIVAHGAYGTVYRGTYDTQDVAVKVLDWGDDGVATAAETSALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPSKNSTDNQETLPSRACCVIVEFLTGGTLKQYLIKNRRKKLAYKIVVQLALDLSRGLSYLHSKKIVHRDVKSENMLLDGNRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRTCDVYSFGICLWEMYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSALVNIMRKCWDGNPSKRPEMEEVVRMLEALDTSKGGGMIPEDQSSGCFCFAPARGP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08205 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vifa1g08205 386 FunFam Serine/threonine-protein kinase HT1 183 368 - -
Vifa1g08205 386 SMART serkin_6 80 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08205 386 CDD STKc_MAP3K-like 86 357 - -
Vifa1g08205 386 PRINTS Tyrosine kinase catalytic domain signature 328 350 IPR001245 GO:0004672|GO:0006468
Vifa1g08205 386 PRINTS Tyrosine kinase catalytic domain signature 218 236 IPR001245 GO:0004672|GO:0006468
Vifa1g08205 386 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Vifa1g08205 386 PRINTS Tyrosine kinase catalytic domain signature 180 193 IPR001245 GO:0004672|GO:0006468
Vifa1g08205 386 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 61 360 - -
Vifa1g08205 386 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g08205 386 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g08205 386 Gene3D Transferase(Phosphotransferase) domain 1 185 370 - -
Vifa1g08205 386 Gene3D Phosphorylase Kinase; domain 1 69 162 - -
Vifa1g08205 386 FunFam Kinase suppressor of Ras 1 69 164 - -
Vifa1g08205 386 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
Vifa1g08205 386 ProSiteProfiles Protein kinase domain profile. 80 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08205 386 Pfam Protein tyrosine and serine/threonine kinase 83 357 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08205 Vifa-Chr1 1280955252 1280957692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08205 28 386 MAP Kinase Kinase Kinase AT3G22750 80.501 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g08205 PK_Tyr_Ser-Thr 5.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08205 - - gmx:100803917 688.337